Os12g0137200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Saccharopine dehydrogenase family protein.
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Os12g0137200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Saccharopine dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.94 | 0.382 | 11.8 | -1.09 | 0.318 | 1.22 | -0.21 | -1.53 | -0.649 | 18.2 | 23.36 | 42 | -- | -- |
| 67.23 | 0.382 | 11.8 | -0.866 | 0.329 | 1.1 | -0.391 | -- | -0.588 | 17.9 | 23.2 | 43 | -- | -- |
| 66.03 | 0.378 | 11.8 | -1.09 | 0.319 | 1.21 | -- | -1.6 | -0.653 | 18.1 | 23.29 | 44 | -- | -- |
| 67.57 | 0.383 | 11.8 | -0.858 | 0.342 | 1.07 | -- | -- | -0.581 | 17.9 | 23.2 | 39 | -- | -- |
| 69.31 | 0.388 | 11.8 | -1.21 | -- | 1.42 | -- | -2.17 | -0.693 | -- | 23.6 | 109 | -- | -- |
| 85.65 | 0.434 | 11.7 | -0.656 | 0.716 | -- | 0.0131 | -- | -0.429 | 16.3 | -- | -- | -- | -- |
| 85.65 | 0.433 | 11.7 | -0.656 | 0.716 | -- | -- | -- | -0.429 | 16.3 | -- | -- | -- | -- |
| 71.81 | 0.395 | 11.8 | -0.914 | -- | 1.25 | -- | -- | -0.606 | -- | 23.42 | 96 | -- | -- |
| 85.6 | 0.433 | 11.7 | -- | 0.445 | 0.83 | -- | -- | -0.449 | 17.4 | 23.71 | 46 | -- | -- |
| 113.22 | 0.497 | 11.7 | -0.684 | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
| 96.98 | 0.461 | 11.7 | -- | 0.728 | -- | -- | -- | -0.356 | 16.3 | -- | -- | -- | -- |
| 92.11 | 0.447 | 11.7 | -- | -- | 1.12 | -- | -- | -0.454 | -- | 24.51 | 100 | -- | -- |
| 125.56 | 0.523 | 11.7 | -- | -- | -- | -- | -- | -0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.86 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 8 | 64.62 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 15 | 65.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 19 | 65.25 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 25 | 65.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 31 | 65.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 33 | 65.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 36 | 65.48 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 48 | 65.62 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 52 | 65.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 142 | 66.55 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 159 | 66.66 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 199 | 66.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 252 | 67.35 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 253 | 67.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 304 | 67.59 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 12 |
| 307 | 67.60 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 395 | 67.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 492 | 68.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 497 | 68.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 518 | 68.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 575 | 68.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 583 | 68.43 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 644 | 68.57 | humidity | 90 | 1440 | < th | dose dependent | sin | 23 | NA |
| 666 | 68.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 667 | 68.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 678 | 68.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 689 | 68.66 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 720 | 68.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 747 | 68.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 764 | 68.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 799 | 68.85 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 810 | 68.87 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 14 |
| 811 | 68.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 960 | 69.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 967 | 69.13 | temperature | 30 | 30 | < th | dose dependent | sin | 22 | NA |