Os12g0136500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0136500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 267.61 | 0.769 | 8.97 | -1.13 | 4.06 | 2.66 | -0.173 | 0.742 | 1.19 | 1.21 | 22.32 | 42 | 15.7 | -- |
| 268.65 | 0.763 | 8.97 | -1.14 | 4.07 | 2.67 | -0.226 | -- | 1.19 | 1.21 | 22.4 | 41 | 15.7 | -- |
| 267.67 | 0.762 | 8.97 | -1.12 | 4.06 | 2.67 | -- | 0.799 | 1.19 | 1.25 | 22.67 | 41 | 15.7 | -- |
| 268.86 | 0.764 | 8.97 | -1.13 | 4.07 | 2.66 | -- | -- | 1.19 | 1.19 | 22.4 | 41 | 15.8 | -- |
| 607.55 | 1.15 | 9 | -1.55 | -- | 4.31 | -- | -1.31 | 1.07 | -- | 7.174 | 534 | 13.1 | -- |
| 396.31 | 0.933 | 9.02 | -1.22 | 4.01 | -- | 0.219 | -- | 1.08 | 0.0247 | -- | -- | -- | -- |
| 396.52 | 0.933 | 9.02 | -1.23 | 4.01 | -- | -- | -- | 1.08 | 0.0286 | -- | -- | -- | -- |
| 374.53 | 0.901 | 8.91 | -1.12 | -- | 4.77 | -- | -- | 1.24 | -- | 138.4 | 856 | 13.7 | -- |
| 302.22 | 0.81 | 8.94 | -- | 4.07 | 2.73 | -- | -- | 1.32 | 1.19 | 22.63 | 45 | 15.8 | -- |
| 1407.67 | 1.75 | 8.94 | -1.11 | -- | -- | -- | -- | 1.13 | -- | -- | -- | -- | -- |
| 436.46 | 0.977 | 8.99 | -- | 3.99 | -- | -- | -- | 1.22 | 0.0112 | -- | -- | -- | -- |
| 407.72 | 0.94 | 8.88 | -- | -- | 4.8 | -- | -- | 1.38 | -- | 130 | 859 | 13.8 | -- |
| 1439.92 | 1.77 | 8.91 | -- | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 272.16 | radiation | 20.0 | 30 | < th | dose dependent | sin | 22 | NA |
| 5 | 273.29 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 6 | 273.64 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 10 | 275.09 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 17 | 277.67 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 21 | 278.28 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 33 | 279.57 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 41 | 280.57 | radiation | 30.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 44 | 280.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 46 | 280.75 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 48 | 280.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 18 |
| 49 | 280.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 18 |
| 63 | 281.86 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 64 | 281.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 20 |
| 65 | 281.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 75 | 282.57 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 80 | 282.94 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 83 | 283.28 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 89 | 283.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 96 | 284.05 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 97 | 284.08 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 116 | 284.45 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 23 | 17 |
| 117 | 284.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 18 |
| 119 | 284.65 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 128 | 285.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 129 | 285.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 18 |
| 142 | 285.42 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 6 |
| 151 | 285.85 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 178 | 287.09 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 186 | 287.47 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 190 | 287.57 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 8 |
| 202 | 287.92 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 219 | 288.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 229 | 288.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 234 | 288.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 301 | 289.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 309 | 289.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 325 | 290.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 327 | 290.23 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 329 | 290.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 336 | 290.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 358 | 290.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 4 |
| 373 | 291.01 | radiation | 10.0 | 90 | > th | dose independent | sin | 23 | NA |
| 374 | 291.01 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 380 | 291.18 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 393 | 291.47 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 15 |
| 404 | 291.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 6 |
| 424 | 291.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 440 | 291.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 442 | 291.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 512 | 292.91 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 551 | 293.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 556 | 293.43 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 584 | 293.83 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 603 | 294.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 604 | 294.05 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 605 | 294.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 607 | 294.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 619 | 294.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 620 | 294.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 637 | 294.39 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 10 |
| 661 | 294.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 6 |
| 662 | 294.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 689 | 295.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 720 | 295.36 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 737 | 295.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 738 | 295.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 751 | 295.78 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 15 | 5 |
| 785 | 296.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 9 |
| 801 | 296.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 802 | 296.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 9 |
| 806 | 296.38 | humidity | 60.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 825 | 296.51 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 847 | 296.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 848 | 296.88 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 849 | 296.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 850 | 296.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 851 | 296.88 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 856 | 296.88 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 857 | 296.88 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 858 | 296.88 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 863 | 296.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 868 | 296.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 903 | 297.24 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 973 | 297.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 974 | 297.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 982 | 297.69 | humidity | 70.0 | 10 | > th | dose independent | rect. | 4 | 16 |