Os12g0135000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0135000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.47 | 0.313 | 8.26 | 0.855 | 0.622 | -0.158 | 1.29 | 3.64 | 0.00369 | 9.98 | 18.6 | 677 | -- | -- |
| 52.65 | 0.338 | 8.35 | 0.0544 | 0.639 | 0.212 | 0.699 | -- | -0.177 | 10.2 | 30.12 | 4364 | -- | -- |
| 46.3 | 0.317 | 8.25 | 0.897 | 0.637 | -0.0717 | -- | 3.42 | 0.00339 | 9.9 | 14.3 | 1718 | -- | -- |
| 54.2 | 0.343 | 8.35 | 0.0767 | 0.643 | 0.205 | -- | -- | -0.175 | 9.97 | 29.81 | 4130 | -- | -- |
| 69.81 | 0.389 | 8.26 | 1.01 | -- | -0.23 | -- | 3.18 | 0.0364 | -- | 18.02 | 1892 | -- | -- |
| 54.21 | 0.345 | 8.36 | 0.104 | 0.632 | -- | 0.611 | -- | -0.21 | 10 | -- | -- | -- | -- |
| 55.64 | 0.349 | 8.36 | 0.126 | 0.632 | -- | -- | -- | -0.209 | 9.88 | -- | -- | -- | -- |
| 76.49 | 0.409 | 8.39 | 0.0416 | -- | 0.387 | -- | -- | -0.27 | -- | 18.02 | 1892 | -- | -- |
| 54.35 | 0.343 | 8.35 | -- | 0.643 | 0.217 | -- | -- | -0.181 | 9.97 | 29.8 | 4130 | -- | -- |
| 79.56 | 0.417 | 8.37 | 0.12 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 56.06 | 0.35 | 8.36 | -- | 0.632 | -- | -- | -- | -0.223 | 9.86 | -- | -- | -- | -- |
| 76.54 | 0.409 | 8.39 | -- | -- | 0.398 | -- | -- | -0.276 | -- | 18.02 | 1892 | -- | -- |
| 79.93 | 0.417 | 8.38 | -- | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.14 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 42.25 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 3 | 42.47 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 18 | 42.83 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 24 | 42.95 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 26 | 42.96 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 36 | 43.00 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 16 |
| 37 | 43.01 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 16 | NA |
| 49 | 43.04 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 19 |
| 53 | 43.05 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 63 | 43.07 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 128 | 43.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 136 | 43.20 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 139 | 43.21 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 15 |
| 142 | 43.22 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 144 | 43.22 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 182 | 43.29 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 16 | NA |
| 207 | 43.31 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 21 |
| 261 | 43.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 263 | 43.37 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 266 | 43.38 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 290 | 43.39 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 331 | 43.43 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 339 | 43.44 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 359 | 43.46 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 399 | 43.50 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 416 | 43.50 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 418 | 43.50 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 451 | 43.54 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 459 | 43.54 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 474 | 43.56 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 583 | 43.70 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 641 | 43.78 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 719 | 43.91 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 728 | 43.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 786 | 44.05 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 811 | 44.10 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 816 | 44.12 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 848 | 44.17 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 867 | 44.22 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 885 | 44.25 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 905 | 44.29 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 906 | 44.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 922 | 44.33 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 923 | 44.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 940 | 44.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 942 | 44.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 944 | 44.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 965 | 44.44 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 974 | 44.46 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 996 | 44.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |