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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0134900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0356) R2 : 0.687
β1 : 0.714 (0.142) R2dD : 0.0221 R2D : -0.0145
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.94 (0.104) R2dE : 0.569 R2E : 0.621
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.51 (0.719) R2dD*E : 0.0503 R2D*E : 0.0307
γ1 : 0.45 (0.0772) R2dN8 : 0.0333 R2N8 : 0.0417
σ : 0.656
deviance : 198.09
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.56
memory length : 98
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.15
open length of G : 3.72

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.88 0.649 3.6 0.768 0.46 2.61 -0.332 5.8 0.479 7.03 15.77 95 3.13 3.75
207.65 0.671 3.63 0.205 0.562 2.83 1.21 -- 0.387 6.77 16.82 102 3.11 3.47
190.55 0.643 3.59 0.781 0.488 2.65 -- 5.83 0.492 7.05 16.32 92 3.2 3.65
211.59 0.677 3.63 0.241 0.556 2.88 -- -- 0.393 6.92 17.07 105 3.06 3.48
198.09 0.656 3.62 0.714 -- 2.94 -- 5.51 0.45 -- 15.56 98 3.15 3.72
380.01 0.914 3.55 0.419 2 -- 1.89 -- 0.606 5.92 -- -- -- --
388.73 0.923 3.55 0.434 2.01 -- -- -- 0.599 5.92 -- -- -- --
219.98 0.691 3.63 0.303 -- 3.23 -- -- 0.399 -- 15.68 111 2.98 3.67
213.1 0.68 3.64 -- 0.552 2.93 -- -- 0.363 6.95 17.25 107 3.05 3.48
598.36 1.14 3.59 0.494 -- -- -- -- 0.645 -- -- -- -- --
393.69 0.928 3.56 -- 2.02 -- -- -- 0.55 5.91 -- -- -- --
220.26 0.691 3.65 -- -- 3.25 -- -- 0.355 -- 15.84 118 2.88 3.67
604.79 1.15 3.6 -- -- -- -- -- 0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.10 temperature 15.0 90 > th dose dependent rect. 3 4
6 200.25 wind 5.0 90 < th dose dependent rect. 3 4
7 200.39 temperature 15.0 270 > th dose dependent rect. 1 5
17 207.56 temperature 15.0 10 > th dose dependent rect. 4 3
21 209.51 temperature 20.0 90 > th dose independent rect. 3 4
26 211.69 wind 5.0 10 < th dose dependent rect. 4 3
28 212.43 wind 3.0 90 < th dose independent rect. 3 4
54 218.56 wind 5.0 10 < th dose dependent rect. 4 5
57 218.92 temperature 20.0 10 > th dose independent rect. 4 3
64 220.13 precipitation 0.1 90 < th dose independent rect. 3 4
65 220.13 precipitation 0.1 90 < th dose dependent rect. 3 4
69 220.56 wind 3.0 10 < th dose independent rect. 4 3
72 221.56 humidity 50.0 90 > th dose dependent rect. 3 4
76 221.90 wind 3.0 270 < th dose independent rect. 1 5
92 223.69 radiation 10.0 10 < th dose independent rect. 4 3
110 225.13 radiation 20.0 90 < th dose independent rect. 3 4
114 225.56 humidity 70.0 90 > th dose independent rect. 3 4
118 225.76 temperature 10.0 90 > th dose independent rect. 3 4
120 225.76 temperature 30.0 90 < th dose independent rect. 3 4
121 225.76 humidity 50.0 90 > th dose independent rect. 3 4
123 225.76 atmosphere 995.0 90 > th dose independent rect. 3 4
124 225.76 atmosphere 1015.0 90 < th dose independent rect. 3 4
126 225.76 temperature 10.0 90 > th dose independent rect. 7 20
129 226.15 precipitation 0.1 10 < th dose independent rect. 4 3
130 226.15 precipitation 0.1 10 < th dose dependent rect. 4 3
131 226.18 humidity 50.0 10 > th dose dependent rect. 4 3
132 226.28 wind 9.0 90 < th dose independent rect. 7 20
142 226.95 temperature 10.0 10 > th dose independent rect. 4 3
144 226.95 temperature 30.0 10 < th dose independent rect. 4 3
145 226.95 humidity 50.0 10 > th dose independent rect. 4 3
148 226.95 atmosphere 995.0 10 > th dose independent rect. 4 3
149 226.95 atmosphere 1015.0 10 < th dose independent rect. 4 3
153 226.95 temperature 10.0 10 > th dose independent rect. 7 21
160 227.63 wind 3.0 10 < th dose independent rect. 4 5
165 227.99 wind 9.0 10 < th dose independent rect. 7 21
166 228.13 atmosphere 1015.0 10 < th dose dependent rect. 4 3
172 228.82 radiation 40.0 90 < th dose dependent rect. 3 4
217 231.14 radiation 10.0 270 < th dose dependent rect. 2 3
218 231.15 precipitation 0.1 90 < th dose independent rect. 7 20
219 231.15 precipitation 0.1 90 < th dose dependent rect. 7 20
236 231.34 temperature 10.0 270 > th dose independent rect. 5 21
252 232.54 wind 9.0 270 < th dose independent rect. 5 21
265 233.39 radiation 40.0 10 < th dose dependent rect. 4 3
273 234.23 precipitation 0.1 270 < th dose independent rect. 1 5
274 234.23 precipitation 0.1 270 < th dose dependent rect. 1 5
282 235.02 temperature 25.0 720 > th dose dependent rect. 19 3
290 235.85 humidity 50.0 270 > th dose dependent rect. 1 5
323 236.79 atmosphere 995.0 10 > th dose independent rect. 7 21
344 238.87 atmosphere 995.0 90 > th dose independent rect. 7 20
358 239.68 precipitation 0.1 270 < th dose independent rect. 5 21
359 239.68 precipitation 0.1 270 < th dose dependent rect. 5 21
360 239.74 radiation 10.0 270 < th dose independent rect. 1 5
393 240.80 atmosphere 1015.0 90 < th dose dependent rect. 4 1
406 241.40 atmosphere 1010.0 270 < th dose independent rect. 1 5
408 241.52 humidity 80.0 720 < th dose dependent rect. 18 3
426 241.77 temperature 10.0 270 > th dose independent rect. 1 5
428 241.77 temperature 30.0 270 < th dose independent rect. 1 5
429 241.77 humidity 50.0 270 > th dose independent rect. 1 5
432 241.77 atmosphere 995.0 270 > th dose independent rect. 1 5
439 241.90 humidity 50.0 1440 < th dose independent rect. 16 1
441 241.99 radiation 40.0 270 < th dose dependent rect. 1 5
450 242.11 radiation 10.0 90 < th dose independent rect. 3 6
454 242.24 humidity 60.0 10 > th dose dependent rect. 4 5
460 242.44 humidity 50.0 1440 < th dose dependent rect. 16 1
477 242.92 radiation 30.0 90 < th dose dependent rect. 3 6
558 245.37 humidity 70.0 720 < th dose independent rect. 18 2
573 245.50 atmosphere 1015.0 10 < th dose independent rect. 7 21
581 245.80 atmosphere 1015.0 90 < th dose independent rect. 7 20
605 246.74 radiation 40.0 10 < th dose dependent rect. 4 5
637 247.61 humidity 50.0 1440 > th dose independent rect. 16 1
670 248.76 humidity 70.0 720 < th dose dependent rect. 19 12
685 248.86 temperature 30.0 720 > th dose independent rect. 18 1
782 250.93 humidity 50.0 10 > th dose independent rect. 7 21
789 251.14 temperature 30.0 1440 > th dose dependent rect. 14 5
813 251.36 temperature 30.0 1440 > th dose dependent sin 13 NA
822 251.59 atmosphere 995.0 10 > th dose dependent rect. 4 3
829 251.82 radiation 20.0 90 < th dose dependent rect. 3 8
877 252.23 atmosphere 995.0 270 > th dose independent rect. 5 21