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Os12g0134000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxymethylglutaryl-CoA lyase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0233) R2 : 0.864
β1 : -1.73 (0.0852) R2dD : 0.128 R2D : 0.0971
β2 : 2.99 (0.0601) R2dC : 0.743 R2C : 0.718
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.512 (0.0496) R2dN8 : 0.0426 R2N8 : -0.00213
σ : 0.437
deviance : 87.21
__
_____
C
peak time of C : 7.25
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.51 0.397 11.4 -1.97 2.86 0.247 1.41 0.953 -0.46 7.4 24.59 243 -- --
74.37 0.402 11.4 -1.67 2.84 0.288 1.61 -- -0.36 7.4 24.6 232 -- --
76.44 0.407 11.4 -2.05 2.87 0.233 -- 1.32 -0.5 7.37 24.5 266 -- --
81.78 0.421 11.4 -1.63 2.84 0.316 -- -- -0.351 7.42 24.65 226 -- --
372.86 0.899 11.5 -1.05 -- 1.34 -- 0.733 -0.152 -- 26.04 373 -- --
79.1 0.417 11.4 -1.77 2.98 -- 1.74 -- -0.509 7.26 -- -- -- --
87.21 0.437 11.4 -1.73 2.99 -- -- -- -0.512 7.25 -- -- -- --
345.91 0.866 11.4 -1.12 -- 1.96 -- -- 0.094 -- 26.27 497 -- --
148.67 0.568 11.3 -- 2.78 0.557 -- -- -0.0454 7.52 24.4 242 -- --
559.76 1.11 11.5 -1.68 -- -- -- -- -0.461 -- -- -- -- --
166.24 0.603 11.4 -- 2.97 -- -- -- -0.319 7.29 -- -- -- --
377.32 0.905 11.3 -- -- 2.13 -- -- 0.255 -- 26.23 520 -- --
634.1 1.18 11.5 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.12 precipitation 0.1 720 < th dose independent rect. 1 14
2 67.12 precipitation 0.1 720 < th dose dependent rect. 1 14
3 67.54 wind 9.0 720 < th dose independent rect. 17 14
4 67.58 wind 9.0 720 < th dose independent rect. 19 10
5 67.61 temperature 20.0 30 > th dose independent rect. 22 6
6 67.70 precipitation 0.1 720 < th dose independent rect. 3 10
7 67.70 temperature 20.0 30 > th dose independent rect. 15 13
8 67.70 precipitation 0.1 720 < th dose dependent rect. 3 10
9 67.71 radiation 10.0 720 < th dose independent rect. 19 10
11 67.72 radiation 10.0 720 < th dose dependent rect. 19 10
13 67.77 temperature 10.0 720 > th dose independent rect. 7 10
14 67.77 atmosphere 1015.0 720 < th dose independent rect. 7 10
15 67.77 temperature 10.0 720 > th dose independent rect. 17 14
16 67.77 radiation 30.0 720 < th dose independent rect. 17 14
23 67.92 temperature 10.0 720 > th dose independent rect. 19 10
24 67.92 temperature 30.0 720 < th dose independent rect. 19 10
25 67.92 humidity 50.0 720 > th dose independent rect. 19 10
26 67.92 atmosphere 995.0 720 > th dose independent rect. 19 10
30 67.92 temperature 10.0 720 > th dose independent rect. 5 14
31 67.92 atmosphere 1015.0 720 < th dose independent rect. 5 14
34 68.15 humidity 50.0 720 > th dose dependent rect. 22 3
36 68.18 radiation 40.0 720 < th dose independent rect. 15 10
37 68.21 precipitation 0.1 720 < th dose independent rect. 1 6
38 68.21 precipitation 0.1 720 < th dose dependent rect. 1 6
40 68.25 temperature 10.0 720 > th dose independent rect. 3 10
41 68.25 atmosphere 995.0 720 > th dose independent rect. 3 10
42 68.25 temperature 10.0 720 > th dose independent rect. 13 14
43 68.27 temperature 10.0 720 > th dose independent rect. 15 10
44 68.27 temperature 10.0 720 > th dose independent rect. 1 14
45 68.33 temperature 20.0 270 > th dose independent rect. 13 12
46 68.34 atmosphere 1015.0 720 < th dose independent rect. 3 10
48 68.44 temperature 15.0 30 > th dose dependent rect. 22 6
49 68.45 temperature 20.0 270 > th dose independent rect. 22 3
50 68.52 precipitation 0.1 720 < th dose independent rect. 19 10
51 68.52 precipitation 0.1 720 < th dose dependent rect. 19 10
52 68.61 precipitation 0.1 270 < th dose independent rect. 1 12
53 68.61 precipitation 0.1 270 < th dose dependent rect. 1 12
55 68.77 temperature 20.0 30 > th dose independent rect. 7 21
59 68.82 wind 9.0 720 < th dose dependent rect. 7 1
61 68.84 wind 9.0 720 < th dose independent rect. 7 10
66 68.97 wind 7.0 720 < th dose independent rect. 5 5
67 68.98 radiation 10.0 720 < th dose independent rect. 1 5
68 69.02 wind 7.0 720 < th dose independent rect. 1 6
69 69.07 precipitation 0.1 720 < th dose independent rect. 18 19
70 69.07 precipitation 0.1 720 < th dose dependent rect. 18 19
71 69.16 wind 9.0 720 < th dose independent rect. 17 5
74 69.19 humidity 70.0 720 > th dose independent rect. 1 6
77 69.20 wind 9.0 90 < th dose independent rect. 7 12
79 69.22 radiation 30.0 720 < th dose independent rect. 1 6
80 69.23 temperature 10.0 720 > th dose independent rect. 1 6
81 69.23 temperature 30.0 720 < th dose independent rect. 1 6
82 69.23 humidity 50.0 720 > th dose independent rect. 1 6
84 69.23 atmosphere 995.0 720 > th dose independent rect. 1 6
86 69.23 precipitation 0.1 720 < th dose independent rect. 9 6
87 69.23 temperature 10.0 720 > th dose independent rect. 7 18
88 69.23 precipitation 0.1 720 < th dose dependent rect. 9 6
89 69.25 temperature 10.0 720 > th dose independent rect. 13 6
90 69.25 atmosphere 1015.0 720 < th dose independent rect. 13 6
91 69.25 temperature 10.0 720 > th dose independent rect. 19 18
92 69.25 atmosphere 995.0 720 > th dose independent rect. 19 18
94 69.27 temperature 20.0 270 > th dose dependent rect. 22 3
101 69.37 temperature 10.0 720 > th dose independent rect. 17 5
102 69.37 radiation 30.0 720 < th dose independent rect. 17 5
104 69.37 temperature 10.0 720 > th dose independent rect. 22 19
105 69.39 precipitation 0.1 720 < th dose independent rect. 18 4
106 69.39 precipitation 0.1 720 < th dose dependent rect. 18 4
107 69.40 precipitation 0.1 90 < th dose independent rect. 19 12
108 69.40 precipitation 0.1 90 < th dose dependent rect. 19 12
109 69.41 humidity 50.0 720 > th dose independent rect. 5 5
110 69.42 precipitation 0.1 720 < th dose independent rect. 3 2
111 69.42 precipitation 0.1 720 < th dose dependent rect. 3 2
118 69.46 temperature 10.0 720 > th dose independent rect. 5 5
119 69.46 atmosphere 995.0 720 > th dose independent rect. 5 5
120 69.46 atmosphere 1015.0 720 < th dose independent rect. 5 5
121 69.46 temperature 10.0 720 > th dose independent rect. 10 19
123 69.51 temperature 10.0 90 > th dose independent rect. 7 12
125 69.51 temperature 10.0 90 > th dose independent rect. 19 12
126 69.51 temperature 30.0 90 < th dose independent rect. 19 12
127 69.51 humidity 50.0 90 > th dose independent rect. 19 12
129 69.51 atmosphere 995.0 90 > th dose independent rect. 19 12
130 69.51 atmosphere 1015.0 90 < th dose independent rect. 7 12
131 69.51 radiation 40.0 90 < th dose independent rect. 19 12
132 69.51 precipitation 0.1 90 < th dose independent rect. 7 12
134 69.51 precipitation 0.1 90 < th dose dependent rect. 7 12
135 69.52 wind 9.0 720 < th dose independent rect. 3 10
139 69.53 wind 9.0 90 < th dose independent rect. 19 12
140 69.55 wind 9.0 270 < th dose independent rect. 13 12
141 69.55 wind 9.0 720 < th dose dependent rect. 6 4
142 69.56 temperature 10.0 720 > th dose independent rect. 9 6
143 69.56 atmosphere 1015.0 720 < th dose independent rect. 9 6
144 69.56 temperature 10.0 720 > th dose independent rect. 15 18
147 69.57 wind 9.0 720 < th dose independent rect. 22 19
148 69.58 precipitation 0.1 720 < th dose independent rect. 13 5
149 69.58 precipitation 0.1 720 < th dose dependent rect. 13 5
151 69.60 temperature 10.0 720 > th dose independent rect. 21 6
152 69.60 temperature 30.0 720 < th dose independent rect. 21 6
153 69.60 humidity 50.0 720 > th dose independent rect. 21 6
156 69.60 atmosphere 995.0 720 > th dose independent rect. 21 6
157 69.60 radiation 1.0 720 < th dose independent rect. 21 6
162 69.60 temperature 10.0 720 > th dose independent rect. 3 18
163 69.60 radiation 1.0 720 < th dose dependent rect. 21 6
170 69.66 wind 5.0 720 < th dose independent rect. 7 2
175 69.67 radiation 40.0 720 < th dose dependent rect. 1 6
177 69.67 temperature 10.0 270 > th dose dependent rect. 21 12
181 69.76 wind 1.0 720 > th dose independent rect. 15 2
184 69.79 precipitation 0.1 720 < th dose independent rect. 5 5
185 69.79 precipitation 0.1 720 < th dose dependent rect. 5 5
186 69.80 radiation 40.0 720 < th dose dependent rect. 17 5
187 69.81 precipitation 0.1 720 < th dose independent rect. 19 1
188 69.81 precipitation 0.1 720 < th dose dependent rect. 19 1
193 69.85 radiation 1.0 720 > th dose independent rect. 10 3
199 69.85 radiation 40.0 270 < th dose dependent rect. 17 13
213 69.89 temperature 10.0 30 > th dose dependent rect. 7 21
217 69.94 wind 9.0 720 < th dose independent rect. 19 18
219 69.95 wind 9.0 720 < th dose independent rect. 21 6
220 69.95 wind 9.0 720 < th dose independent rect. 5 14
222 69.96 radiation 40.0 720 < th dose independent rect. 15 2
225 69.96 humidity 50.0 720 > th dose independent rect. 18 4
236 69.97 wind 9.0 720 < th dose independent rect. 15 10
239 69.98 radiation 1.0 720 > th dose independent rect. 9 6
242 69.99 temperature 20.0 720 > th dose independent rect. 15 2
244 69.99 precipitation 0.1 270 < th dose independent rect. 13 12
246 69.99 precipitation 0.1 270 < th dose dependent rect. 13 12
256 70.04 radiation 10.0 720 < th dose independent rect. 3 2
258 70.04 radiation 40.0 90 < th dose dependent rect. 19 12
261 70.05 radiation 10.0 720 < th dose dependent rect. 3 2
262 70.06 wind 7.0 720 < th dose independent rect. 3 2
264 70.07 wind 1.0 720 > th dose independent rect. 10 3
267 70.10 temperature 10.0 720 > th dose independent rect. 15 2
268 70.10 atmosphere 1015.0 720 < th dose independent rect. 15 2
270 70.10 temperature 10.0 720 > th dose independent rect. 17 22
276 70.12 wind 9.0 720 < th dose independent rect. 1 14
277 70.13 wind 9.0 720 < th dose independent rect. 15 2
281 70.15 temperature 10.0 270 > th dose independent rect. 1 12
282 70.15 temperature 10.0 270 > th dose independent rect. 13 12
283 70.15 atmosphere 995.0 270 > th dose independent rect. 1 12
284 70.15 atmosphere 1015.0 270 < th dose independent rect. 1 12
287 70.17 precipitation 0.1 720 < th dose independent rect. 7 10
290 70.17 precipitation 0.1 720 < th dose dependent rect. 7 10
294 70.21 temperature 10.0 720 > th dose independent rect. 3 2
295 70.21 temperature 30.0 720 < th dose independent rect. 3 2
296 70.21 humidity 50.0 720 > th dose independent rect. 3 2
299 70.21 atmosphere 995.0 720 > th dose independent rect. 3 2
303 70.21 temperature 10.0 720 > th dose independent rect. 5 22
306 70.23 temperature 30.0 90 < th dose dependent rect. 19 12
312 70.25 precipitation 0.1 14400 < th dose independent rect. 17 1
313 70.25 atmosphere 1015.0 720 < th dose independent rect. 3 2
315 70.25 precipitation 0.1 14400 < th dose dependent rect. 17 1
317 70.28 temperature 10.0 720 > th dose independent rect. 10 3
318 70.28 temperature 10.0 720 > th dose independent rect. 22 3
319 70.28 temperature 30.0 720 < th dose independent rect. 22 3
320 70.28 humidity 50.0 720 > th dose independent rect. 22 3
323 70.28 atmosphere 995.0 720 > th dose independent rect. 10 3
324 70.28 atmosphere 995.0 720 > th dose independent rect. 22 3
325 70.28 atmosphere 1015.0 720 < th dose independent rect. 10 3
326 70.28 radiation 1.0 720 < th dose independent rect. 22 3
331 70.28 precipitation 0.1 720 < th dose independent rect. 10 3
338 70.28 temperature 10.0 720 > th dose independent rect. 1 21
339 70.28 temperature 10.0 720 > th dose independent rect. 13 21
340 70.28 radiation 1.0 720 < th dose dependent rect. 22 3
345 70.28 precipitation 0.1 720 < th dose dependent rect. 10 3
347 70.28 temperature 10.0 30 > th dose dependent rect. 15 13
348 70.29 wind 9.0 720 < th dose independent rect. 13 5
349 70.29 wind 9.0 720 < th dose independent rect. 13 14
351 70.31 precipitation 0.1 720 < th dose independent rect. 5 13
352 70.31 precipitation 0.1 720 < th dose dependent rect. 5 13
353 70.33 wind 9.0 720 < th dose independent rect. 22 3
366 70.35 temperature 10.0 720 > th dose independent rect. 22 11
367 70.35 humidity 50.0 720 > th dose independent rect. 22 11
368 70.35 atmosphere 995.0 720 > th dose independent rect. 22 11
369 70.35 temperature 10.0 720 > th dose independent rect. 9 13
370 70.35 humidity 50.0 720 > th dose independent rect. 21 13
374 70.39 temperature 10.0 720 > th dose independent rect. 10 11
375 70.39 wind 9.0 270 < th dose independent rect. 1 12
376 70.39 temperature 10.0 720 > th dose independent rect. 21 13
377 70.39 atmosphere 995.0 720 > th dose independent rect. 21 13
382 70.41 wind 9.0 720 < th dose independent rect. 22 11
400 70.44 wind 7.0 720 < th dose independent rect. 19 2
408 70.47 temperature 20.0 90 > th dose independent rect. 22 21
411 70.49 temperature 10.0 720 > th dose independent rect. 7 2
413 70.49 humidity 50.0 720 > th dose independent rect. 7 2
414 70.49 atmosphere 995.0 720 > th dose independent rect. 7 2
415 70.49 atmosphere 1015.0 720 < th dose independent rect. 7 2
417 70.49 temperature 10.0 720 > th dose independent rect. 9 22
422 70.54 atmosphere 995.0 720 > th dose independent rect. 18 4
423 70.54 wind 9.0 90 < th dose independent rect. 15 12
429 70.56 temperature 10.0 720 > th dose independent rect. 19 2
430 70.56 temperature 30.0 720 < th dose independent rect. 19 2
431 70.56 humidity 50.0 720 > th dose independent rect. 19 2
433 70.56 atmosphere 995.0 720 > th dose independent rect. 19 2
434 70.56 radiation 1.0 720 < th dose independent rect. 19 2
439 70.56 temperature 10.0 720 > th dose independent rect. 21 22
440 70.56 radiation 1.0 720 < th dose dependent rect. 19 2
447 70.57 precipitation 0.1 270 < th dose independent rect. 17 13
448 70.57 precipitation 0.1 14400 > th dose dependent rect. 17 1
449 70.57 precipitation 0.1 270 < th dose dependent rect. 17 13
455 70.58 radiation 40.0 270 < th dose independent rect. 13 13
461 70.59 wind 9.0 720 < th dose independent rect. 21 13
471 70.62 precipitation 0.1 720 < th dose independent rect. 7 2
473 70.62 precipitation 0.1 720 < th dose independent rect. 21 6
474 70.62 atmosphere 995.0 270 > th dose independent rect. 17 13
477 70.62 precipitation 0.1 720 < th dose dependent rect. 7 2
478 70.62 precipitation 0.1 720 < th dose dependent rect. 21 6
482 70.65 precipitation 0.1 14400 > th dose independent rect. 17 1
484 70.66 precipitation 0.1 720 < th dose independent rect. 22 3
485 70.66 precipitation 0.1 720 < th dose dependent rect. 22 3
489 70.68 humidity 50.0 270 > th dose independent rect. 17 13
490 70.68 atmosphere 995.0 720 > th dose independent rect. 1 14
504 70.77 radiation 40.0 30 < th dose dependent rect. 15 13
507 70.78 atmosphere 1015.0 720 < th dose independent rect. 1 14
508 70.79 atmosphere 1015.0 720 < th dose independent rect. 1 5
520 70.81 temperature 30.0 720 < th dose independent rect. 7 1
525 70.81 wind 1.0 90 > th dose independent rect. 7 12
529 70.82 precipitation 0.1 720 < th dose independent rect. 15 2
532 70.82 precipitation 0.1 720 < th dose dependent rect. 15 2
536 70.83 radiation 40.0 720 < th dose independent rect. 15 18
546 70.86 wind 9.0 720 < th dose independent rect. 10 3
547 70.86 atmosphere 1015.0 720 < th dose independent rect. 22 3
561 70.89 temperature 25.0 270 < th dose independent rect. 8 22
563 70.90 precipitation 0.1 90 < th dose independent rect. 15 12
564 70.90 precipitation 0.1 90 < th dose dependent rect. 15 12
570 70.91 atmosphere 1015.0 720 < th dose independent rect. 19 1
587 70.91 temperature 20.0 90 > th dose independent rect. 22 13
588 70.91 wind 9.0 720 < th dose independent rect. 6 19
597 70.93 humidity 90.0 720 < th dose independent rect. 10 3
599 70.94 atmosphere 995.0 90 > th dose independent rect. 7 12
604 70.95 humidity 50.0 720 > th dose dependent rect. 7 1
607 70.96 atmosphere 1015.0 270 < th dose independent rect. 22 12
608 70.96 wind 9.0 720 < th dose independent rect. 15 18
622 71.00 precipitation 0.1 720 < th dose independent rect. 10 20
623 71.00 precipitation 0.1 720 < th dose dependent rect. 10 20
632 71.04 radiation 40.0 720 < th dose independent rect. 7 1
634 71.04 temperature 30.0 720 < th dose independent rect. 22 11
635 71.04 radiation 1.0 30 < th dose independent rect. 22 21
654 71.05 radiation 40.0 90 < th dose independent rect. 15 12
667 71.06 temperature 10.0 90 > th dose independent rect. 15 12
671 71.06 temperature 30.0 1440 < th dose independent rect. 20 12
715 71.11 wind 9.0 720 < th dose independent rect. 10 19
717 71.11 wind 9.0 720 < th dose independent rect. 13 21
730 71.13 temperature 25.0 270 < th dose dependent rect. 8 14
738 71.16 radiation 40.0 720 < th dose independent rect. 22 11
739 71.16 wind 9.0 90 < th dose independent rect. 3 12
744 71.16 radiation 1.0 30 < th dose dependent rect. 22 21
746 71.17 wind 9.0 720 < th dose independent rect. 9 6
750 71.18 wind 1.0 720 > th dose independent rect. 19 1
755 71.20 temperature 25.0 270 < th dose independent rect. 1 21
757 71.20 wind 3.0 43200 < th dose dependent rect. 23 7
759 71.21 humidity 50.0 30 > th dose independent rect. 15 13
777 71.25 radiation 20.0 10 < th dose dependent rect. 7 21
795 71.30 radiation 10.0 10 < th dose independent rect. 13 15
801 71.31 precipitation 0.1 720 < th dose independent rect. 1 21
803 71.31 precipitation 0.1 720 < th dose dependent rect. 1 21
807 71.33 atmosphere 1015.0 720 < th dose independent rect. 3 18
813 71.34 temperature 20.0 30 > th dose independent rect. 9 19
877 71.43 wind 1.0 720 > th dose independent rect. 18 3
903 71.45 atmosphere 995.0 30 > th dose dependent rect. 4 11
907 71.47 atmosphere 995.0 720 > th dose independent rect. 9 6
912 71.47 temperature 25.0 270 < th dose dependent rect. 8 21
920 71.49 atmosphere 1015.0 720 < th dose independent rect. 10 10
947 71.53 wind 9.0 720 < th dose independent rect. 17 22
988 71.59 temperature 25.0 90 < th dose independent rect. 4 19