Os12g0133600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0133600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.94 | 0.225 | 10.3 | 0.024 | 0.395 | 0.663 | -0.221 | -0.967 | -0.0626 | 22.8 | 21.57 | 69 | -- | -- |
| 23.61 | 0.226 | 10.2 | 0.196 | 0.389 | 0.588 | -0.0744 | -- | -0.0163 | 22.6 | 21.33 | 86 | -- | -- |
| 23.02 | 0.223 | 10.2 | 0.0548 | 0.384 | 0.646 | -- | -0.936 | -0.0472 | 22.8 | 22.73 | 79 | -- | -- |
| 23.58 | 0.226 | 10.2 | 0.207 | 0.383 | 0.578 | -- | -- | -0.00461 | 22.6 | 22.31 | 72 | -- | -- |
| 27.58 | 0.245 | 10.3 | -0.0461 | -- | 0.637 | -- | -1.25 | -0.0873 | -- | 20.37 | 606 | -- | -- |
| 29.23 | 0.253 | 10.2 | 0.328 | 0.372 | -- | -0.0105 | -- | 0.0885 | 20.3 | -- | -- | -- | -- |
| 29.23 | 0.253 | 10.2 | 0.328 | 0.372 | -- | -- | -- | 0.0885 | 20.3 | -- | -- | -- | -- |
| 29.05 | 0.251 | 10.2 | 0.18 | -- | 0.572 | -- | -- | -0.0213 | -- | 19.32 | 578 | -- | -- |
| 24.62 | 0.231 | 10.2 | -- | 0.388 | 0.634 | -- | -- | -0.0285 | 22.7 | 21.41 | 72 | -- | -- |
| 36.87 | 0.284 | 10.2 | 0.325 | -- | -- | -- | -- | 0.0844 | -- | -- | -- | -- | -- |
| 32.06 | 0.265 | 10.2 | -- | 0.37 | -- | -- | -- | 0.052 | 20.3 | -- | -- | -- | -- |
| 29.41 | 0.253 | 10.2 | -- | -- | 0.78 | -- | -- | -0.0461 | -- | 10 | 582 | -- | -- |
| 39.66 | 0.294 | 10.2 | -- | -- | -- | -- | -- | 0.0483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 3 | 20.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 13 | 21.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 16 |
| 22 | 21.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 33 | 21.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 45 | 21.77 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 62 | 21.94 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 86 | 22.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 146 | 22.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 173 | 22.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 175 | 22.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 185 | 22.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 208 | 22.84 | temperature | 20 | 10 | > th | dose dependent | sin | 21 | NA |
| 222 | 22.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 230 | 22.91 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 285 | 23.02 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 310 | 23.06 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 377 | 23.17 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 413 | 23.23 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 20 |
| 424 | 23.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 456 | 23.30 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 9 |
| 486 | 23.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 488 | 23.35 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 508 | 23.39 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 594 | 23.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 595 | 23.51 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 637 | 23.55 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 21 |
| 770 | 23.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 789 | 23.75 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 815 | 23.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 848 | 23.81 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 908 | 23.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 952 | 23.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 998 | 23.97 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |