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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0133000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Major facilitator superfamily antiporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0562) R2 : 0.102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.26 (0.33) R2dE : 0.0931 R2E : 0.0824
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.286 (0.119) R2dN8 : 0.0199 R2N8 : 0.00926
σ : 1.05
deviance : 512.2
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 18.65
memory length : 74
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 0.866

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
506.77 1.06 4.07 0.579 0.0392 2.41 -0.691 -4 -0.222 1.03 19.84 90 12 0.866
502.9 1.04 4.09 0.606 0.0934 2.32 -0.692 -- -0.243 0.0566 22.92 98 12.1 0.567
503.16 1.04 4.05 0.64 0.0435 2.3 -- -3.25 -0.219 1.11 19.43 78 12 0.85
504.25 1.05 4.08 0.657 0.106 2.3 -- -- -0.257 22.9 22.93 98 12.1 0.546
500.24 1.04 4.08 0.61 -- 2.33 -- -2.74 -0.261 -- 18.65 76 12 0.838
552.65 1.1 4.06 0.61 0.197 -- 0.385 -- -0.187 14.9 -- -- -- --
553.09 1.1 4.06 0.619 0.204 -- -- -- -0.185 15.6 -- -- -- --
502.15 1.04 4.08 0.619 -- 2.28 -- -- -0.271 -- 18.86 74 12 0.867
514.3 1.06 4.1 -- 0.111 2.01 -- -- -0.351 22.8 21.66 99 12 0.483
555.41 1.1 4.06 0.61 -- -- -- -- -0.19 -- -- -- -- --
563.18 1.11 4.08 -- 0.192 -- -- -- -0.254 15.6 -- -- -- --
512.2 1.05 4.09 -- -- 2.26 -- -- -0.286 -- 18.65 74 12 0.866
565.24 1.11 4.08 -- -- -- -- -- -0.258 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 511.11 radiation 20.0 90 < th dose independent rect. 12 1
2 513.31 temperature 10.0 30 > th dose dependent rect. 13 23
4 514.53 humidity 60.0 90 > th dose dependent rect. 12 1
6 515.93 radiation 40.0 90 < th dose dependent rect. 12 1
13 519.71 humidity 60.0 90 > th dose independent rect. 12 1
15 519.88 atmosphere 1000.0 10 < th dose dependent rect. 12 11
17 520.13 atmosphere 1000.0 1440 > th dose independent rect. 24 2
23 520.41 atmosphere 1000.0 1440 < th dose independent rect. 1 1
30 521.01 atmosphere 1000.0 10 < th dose dependent rect. 1 22
42 521.41 temperature 30.0 90 < th dose independent rect. 12 1
45 521.53 radiation 40.0 10 > th dose dependent rect. 12 2
46 521.55 wind 5.0 90 > th dose independent rect. 12 1
47 521.56 atmosphere 1000.0 90 < th dose independent rect. 12 10
57 522.09 wind 3.0 90 > th dose dependent rect. 12 1
62 522.19 atmosphere 1000.0 1440 > th dose independent rect. 24 7
63 522.22 atmosphere 1005.0 30 > th dose dependent rect. 12 1
67 522.31 wind 9.0 30 < th dose independent rect. 13 23
102 522.85 temperature 20.0 1440 > th dose dependent rect. 23 1
117 523.23 temperature 15.0 1440 > th dose independent rect. 13 1
150 523.72 atmosphere 1000.0 720 < th dose dependent rect. 12 1
152 523.74 humidity 80.0 30 < th dose independent rect. 12 1
179 524.11 atmosphere 1000.0 30 > th dose independent rect. 12 1
203 524.26 wind 1.0 30 > th dose independent rect. 12 1
208 524.35 wind 7.0 30 < th dose independent rect. 12 1
212 524.38 temperature 10.0 30 > th dose independent rect. 12 1
215 524.38 atmosphere 1015.0 30 < th dose independent rect. 12 1
216 524.38 radiation 1.0 30 > th dose independent rect. 12 1
217 524.38 precipitation 0.1 30 < th dose independent rect. 12 1
218 524.38 atmosphere 1000.0 90 < th dose independent rect. 24 22
219 524.38 temperature 10.0 30 > th dose independent rect. 13 23
220 524.38 precipitation 0.1 30 < th dose dependent rect. 12 1
221 524.40 wind 3.0 30 > th dose independent rect. 5 2
236 524.65 atmosphere 995.0 14400 > th dose independent rect. 13 2
237 524.66 atmosphere 1000.0 1440 < th dose dependent rect. 1 1
239 524.68 wind 9.0 30 < th dose dependent rect. 12 1
244 524.72 atmosphere 1000.0 1440 < th dose dependent rect. 24 9
245 524.75 atmosphere 1000.0 1440 > th dose independent rect. 6 1
247 524.76 atmosphere 1000.0 1440 < th dose dependent rect. 24 7
250 524.79 atmosphere 995.0 1440 > th dose independent rect. 13 2
295 525.22 radiation 1.0 30 > th dose dependent rect. 12 1
318 525.28 temperature 10.0 1440 > th dose independent rect. 14 23
329 525.38 radiation 20.0 10 < th dose independent rect. 14 1
340 525.46 atmosphere 1000.0 720 < th dose dependent rect. 3 11
348 525.55 radiation 40.0 30 > th dose independent rect. 12 1
355 525.59 temperature 10.0 30 > th dose dependent rect. 12 1
366 525.67 atmosphere 1000.0 10 < th dose dependent sin 21 NA
394 525.85 atmosphere 1000.0 1440 < th dose dependent rect. 3 4
395 525.86 atmosphere 1000.0 90 < th dose dependent sin 22 NA
400 525.87 atmosphere 1000.0 90 < th dose dependent rect. 11 21
404 525.90 temperature 30.0 1440 < th dose dependent rect. 23 1
406 525.91 atmosphere 1000.0 90 < th dose independent rect. 12 3
417 525.94 wind 3.0 30 > th dose dependent rect. 6 1
429 526.01 temperature 10.0 1440 > th dose dependent rect. 23 1
436 526.03 atmosphere 1000.0 1440 < th dose dependent rect. 5 1
448 526.06 humidity 90.0 30 < th dose dependent rect. 12 1
469 526.21 radiation 1.0 90 < th dose independent rect. 5 9
471 526.21 atmosphere 1000.0 10 < th dose dependent rect. 12 21
475 526.24 temperature 25.0 1440 < th dose dependent rect. 20 3
515 526.43 radiation 10.0 30 > th dose independent rect. 13 23
532 526.49 temperature 20.0 1440 > th dose dependent rect. 20 8
591 526.80 atmosphere 1000.0 90 < th dose independent rect. 5 17
616 526.90 atmosphere 1000.0 90 < th dose independent rect. 3 19
627 526.97 precipitation 0.1 90 < th dose independent rect. 13 23
628 526.97 precipitation 0.1 90 < th dose dependent rect. 13 23
629 526.98 temperature 20.0 1440 > th dose dependent rect. 1 1
652 527.11 temperature 25.0 4320 < th dose independent rect. 20 1
653 527.12 atmosphere 1015.0 30 < th dose dependent rect. 12 1
660 527.15 atmosphere 1000.0 90 < th dose dependent rect. 13 2
676 527.23 temperature 10.0 1440 > th dose dependent rect. 20 1
738 527.48 temperature 10.0 1440 > th dose dependent rect. 20 4
787 527.70 humidity 50.0 30 > th dose independent rect. 14 22
799 527.77 atmosphere 1000.0 90 < th dose independent rect. 12 5
904 528.09 atmosphere 1000.0 90 < th dose dependent rect. 5 22
920 528.17 atmosphere 1005.0 90 > th dose dependent rect. 1 2
924 528.18 temperature 30.0 270 < th dose dependent rect. 9 22
931 528.22 temperature 25.0 4320 > th dose independent rect. 20 1
956 528.28 temperature 20.0 30 > th dose dependent rect. 20 16