Os12g0132900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0132900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.57 | 0.507 | 7.75 | 1.74 | 0.943 | -2.23 | 1.07 | 2.33 | 0.901 | 4.74 | 22.21 | 1761 | -- | -- |
| 114.49 | 0.498 | 7.79 | 1.35 | 1.13 | -1.94 | 1.05 | -- | 0.928 | 4.84 | 22.6 | 7505 | -- | -- |
| 119.49 | 0.509 | 7.76 | 1.7 | 0.941 | -2.23 | -- | 2.25 | 0.89 | 4.6 | 22.21 | 1772 | -- | -- |
| 117.76 | 0.505 | 7.79 | 1.29 | 1.13 | -1.94 | -- | -- | 0.918 | 4.8 | 22.59 | 7522 | -- | -- |
| 160.45 | 0.59 | 7.81 | 1.7 | -- | -2.46 | -- | 2.7 | 0.708 | -- | 24.81 | 1850 | -- | -- |
| 254.03 | 0.747 | 7.93 | 0.344 | 1.09 | -- | 1.03 | -- | 0.264 | 5.15 | -- | -- | -- | -- |
| 256.66 | 0.75 | 7.93 | 0.343 | 1.09 | -- | -- | -- | 0.259 | 5.08 | -- | -- | -- | -- |
| 165.06 | 0.598 | 7.89 | 1.05 | -- | -2.19 | -- | -- | 0.538 | -- | 24.87 | 1870 | -- | -- |
| 144.63 | 0.56 | 7.86 | -- | 1.11 | -1.57 | -- | -- | 0.55 | 5.01 | 27.45 | 7446 | -- | -- |
| 319.36 | 0.835 | 7.94 | 0.382 | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
| 259.76 | 0.754 | 7.94 | -- | 1.1 | -- | -- | -- | 0.221 | 5.07 | -- | -- | -- | -- |
| 147.66 | 0.566 | 7.87 | -- | -- | -2.49 | -- | -- | 0.585 | -- | 21.54 | 360 | -- | -- |
| 323.22 | 0.839 | 7.95 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 112.83 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 7 | 113.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 8 | 113.61 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 13 | 113.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 14 | 113.87 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 15 | 113.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 18 | 113.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 30 | 114.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 31 | 114.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 40 | 114.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 41 | 114.43 | wind | 7 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 43 | 114.49 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 49 | 114.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 50 | 114.66 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 54 | 114.76 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 56 | 114.80 | wind | 3 | 43200 | > th | dose dependent | sin | 4 | NA |
| 64 | 114.96 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 66 | 114.98 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 92 | 115.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 112 | 115.65 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 126 | 115.80 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 128 | 115.87 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 136 | 115.98 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 161 | 116.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 189 | 116.53 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 192 | 116.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 201 | 116.64 | temperature | 20 | 1440 | > th | dose dependent | sin | 0 | NA |
| 213 | 116.71 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 294 | 117.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 326 | 117.86 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 341 | 117.88 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 344 | 117.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 370 | 118.16 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 429 | 118.60 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 595 | 119.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 609 | 119.64 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 632 | 119.72 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 640 | 119.76 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 669 | 119.87 | humidity | 70 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 675 | 119.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 679 | 119.90 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 693 | 119.95 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 743 | 120.11 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 748 | 120.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 761 | 120.17 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 785 | 120.26 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 791 | 120.29 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 855 | 120.52 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 865 | 120.54 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 881 | 120.59 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 11 | 5 |