Os12g0132200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine kinase.
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Os12g0132200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.64 | 0.514 | 11.4 | -3.24 | 1.16 | 1.39 | 0.42 | -4.04 | -0.689 | 8.7 | 21.2 | 1422 | -- | -- |
| 132.4 | 0.54 | 11.3 | -2 | 1.28 | 2.08 | 0.821 | -- | -0.371 | 6.54 | 14.95 | 5724 | -- | -- |
| 120.21 | 0.511 | 11.4 | -3.24 | 1.16 | 1.4 | -- | -4.09 | -0.694 | 8.75 | 21.2 | 1396 | -- | -- |
| 133.11 | 0.537 | 11.3 | -2.33 | 1.15 | 1.54 | -- | -- | -0.411 | 8.63 | 13.99 | 5774 | -- | -- |
| 195.91 | 0.652 | 11.4 | -3.14 | -- | 1.35 | -- | -3.76 | -0.654 | -- | 20.86 | 1443 | -- | -- |
| 175.7 | 0.621 | 11.2 | -1.59 | 1.15 | -- | 0.491 | -- | -0.0742 | 8.43 | -- | -- | -- | -- |
| 176.47 | 0.622 | 11.2 | -1.57 | 1.15 | -- | -- | -- | -0.0743 | 8.43 | -- | -- | -- | -- |
| 205.89 | 0.668 | 11.3 | -2.38 | -- | 1.6 | -- | -- | -0.49 | -- | 10.09 | 7212 | -- | -- |
| 227.75 | 0.707 | 11.2 | -- | 1.17 | 1.15 | -- | -- | -0.035 | 7.46 | 13.99 | 5774 | -- | -- |
| 249.79 | 0.739 | 11.2 | -1.57 | -- | -- | -- | -- | -0.0628 | -- | -- | -- | -- | -- |
| 241.68 | 0.727 | 11.2 | -- | 1.14 | -- | -- | -- | 0.101 | 8.53 | -- | -- | -- | -- |
| 299.88 | 0.809 | 11.2 | -- | -- | 0.979 | -- | -- | 0.000385 | -- | 10.09 | 7212 | -- | -- |
| 314.57 | 0.828 | 11.2 | -- | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.62 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 107.52 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 4 | 108.03 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 7 | 110.83 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 8 | 110.91 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 16 | 112.37 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 22 | 112.80 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 52 | 113.32 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 55 | 113.37 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 57 | 113.41 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 79 | 113.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 88 | 113.98 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 100 | 114.14 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 103 | 114.18 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 104 | 114.18 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 108 | 114.27 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 138 | 114.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 140 | 114.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 142 | 114.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 163 | 114.96 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 170 | 115.07 | wind | 3 | 43200 | > th | dose dependent | sin | 20 | NA |
| 171 | 115.09 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 197 | 115.25 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 222 | 115.52 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 235 | 115.66 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 239 | 115.71 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 250 | 115.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 350 | 116.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 379 | 116.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 381 | 117.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 386 | 117.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 476 | 117.76 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 498 | 117.95 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 13 |
| 630 | 118.66 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 691 | 118.94 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 711 | 119.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 775 | 119.30 | wind | 9 | 43200 | < th | dose dependent | sin | 21 | NA |
| 964 | 119.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |