Os12g0132000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0132000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.93 | 0.45 | 10.4 | -3.7 | 1.93 | -4.74 | 0.401 | 25.2 | -0.667 | 8.26 | 1000 | 272 | -- | -- |
| 100.07 | 0.469 | 10.1 | -2.15 | 1.92 | -0.267 | 0.38 | -- | -0.668 | 8.2 | 1000 | 272 | -- | -- |
| 92.43 | 0.448 | 10.4 | -3.7 | 1.93 | -4.74 | -- | 25.2 | -0.667 | 8.26 | 1000 | 272 | -- | -- |
| 99.83 | 0.468 | 10.1 | -2.14 | 1.92 | -0.341 | -- | -- | -0.667 | 8.22 | 999.4 | 54 | -- | -- |
| 294.61 | 0.799 | 10.4 | -3.3 | -- | -4.78 | -- | 25.5 | -0.656 | -- | 998.7 | 359 | -- | -- |
| 102.03 | 0.474 | 10.1 | -2.1 | 1.92 | -- | 0.384 | -- | -0.686 | 8.22 | -- | -- | -- | -- |
| 102.49 | 0.474 | 10.1 | -2.09 | 1.92 | -- | -- | -- | -0.686 | 8.22 | -- | -- | -- | -- |
| 302.24 | 0.81 | 10.2 | -2.13 | -- | -0.519 | -- | -- | -0.643 | -- | 998.2 | 81 | -- | -- |
| 216.97 | 0.686 | 10.1 | -- | 1.91 | 0.13 | -- | -- | -0.463 | 8.3 | 1000 | 85 | -- | -- |
| 306.81 | 0.818 | 10.2 | -2.07 | -- | -- | -- | -- | -0.664 | -- | -- | -- | -- | -- |
| 217.46 | 0.69 | 10.1 | -- | 1.91 | -- | -- | -- | -0.454 | 8.3 | -- | -- | -- | -- |
| 418.2 | 0.952 | 10.2 | -- | -- | 0.15 | -- | -- | -0.462 | -- | 1006 | 306 | -- | -- |
| 420.31 | 0.957 | 10.1 | -- | -- | -- | -- | -- | -0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.37 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 2 | 88.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 3 | 89.48 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 5 | 89.59 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 7 | 89.66 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 8 | 89.69 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 12 | 89.74 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 14 | 89.77 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 16 | 89.78 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 22 | 89.97 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 24 | 89.98 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 30 | 90.10 | wind | 7.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 31 | 90.10 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 37 | 90.25 | wind | 7.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 62 | 90.56 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 87 | 90.93 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 102 | 91.04 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 108 | 91.09 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 115 | 91.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 130 | 91.21 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 132 | 91.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 143 | 91.26 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 188 | 91.51 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 196 | 91.59 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 204 | 91.64 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 2 |
| 215 | 91.68 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 250 | 91.83 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 272 | 91.91 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 277 | 91.93 | atmosphere | 1000.0 | 270 | > th | dose independent | no | NA | NA |
| 278 | 91.93 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 280 | 91.93 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 281 | 91.94 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 288 | 91.96 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 289 | 91.96 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 292 | 91.97 | atmosphere | 1000.0 | 270 | < th | dose independent | no | NA | NA |
| 293 | 91.97 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 300 | 91.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 301 | 91.99 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 304 | 91.99 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 323 | 92.01 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 329 | 92.03 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 21 | 6 |
| 331 | 92.03 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 341 | 92.05 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 21 | 15 |
| 349 | 92.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 351 | 92.07 | wind | 1.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 363 | 92.09 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 368 | 92.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 381 | 92.13 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 384 | 92.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 386 | 92.14 | radiation | 20.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 434 | 92.21 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 435 | 92.21 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 460 | 92.23 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 20 | 21 |
| 483 | 92.30 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 492 | 92.32 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 499 | 92.33 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 503 | 92.34 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 511 | 92.35 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 515 | 92.35 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 536 | 92.38 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 537 | 92.38 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 539 | 92.38 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 547 | 92.39 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 585 | 92.42 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 590 | 92.43 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 610 | 92.46 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 614 | 92.46 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 633 | 92.48 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 690 | 92.52 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 709 | 92.54 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 736 | 92.56 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 746 | 92.56 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 20 |
| 750 | 92.57 | atmosphere | 1005.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 803 | 92.60 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 814 | 92.61 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 818 | 92.61 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 834 | 92.62 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 10 |
| 901 | 92.64 | wind | 1.0 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 966 | 92.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 3 |