Os12g0131400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0131400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.14 | 0.528 | 6.34 | 1.15 | 0.515 | -0.965 | 0.024 | 1.44 | 0.827 | 3.34 | 20.58 | 15629 | -- | -- |
| 129.8 | 0.531 | 6.4 | 1.03 | 0.507 | -1.11 | 0.0671 | -- | 0.749 | 3.2 | 20.5 | 21555 | -- | -- |
| 126.11 | 0.523 | 6.34 | 1.16 | 0.508 | -0.991 | -- | 1.4 | 0.828 | 3.34 | 20.49 | 15619 | -- | -- |
| 126.83 | 0.525 | 6.4 | 1.25 | 0.517 | -1.49 | -- | -- | 0.824 | 3.22 | 19.7 | 18309 | -- | -- |
| 140.65 | 0.552 | 6.34 | 1.17 | -- | -0.962 | -- | 1.41 | 0.834 | -- | 20.4 | 16219 | -- | -- |
| 154.02 | 0.582 | 6.52 | -0.127 | 0.494 | -- | -0.02 | -- | 0.304 | 3.47 | -- | -- | -- | -- |
| 154.02 | 0.581 | 6.52 | -0.126 | 0.493 | -- | -- | -- | 0.304 | 3.45 | -- | -- | -- | -- |
| 141.4 | 0.554 | 6.42 | 1.13 | -- | -1.38 | -- | -- | 0.782 | -- | 19.79 | 17648 | -- | -- |
| 138.56 | 0.548 | 6.43 | -- | 0.544 | -0.77 | -- | -- | 0.67 | 3.6 | 23.5 | 11516 | -- | -- |
| 167.67 | 0.605 | 6.52 | -0.105 | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
| 154.44 | 0.581 | 6.52 | -- | 0.491 | -- | -- | -- | 0.318 | 3.45 | -- | -- | -- | -- |
| 153.3 | 0.577 | 6.46 | -- | -- | -0.636 | -- | -- | 0.581 | -- | 22.9 | 11840 | -- | -- |
| 167.96 | 0.605 | 6.52 | -- | -- | -- | -- | -- | 0.329 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.99 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 2 | 125.30 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 3 | 125.37 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 4 | 125.37 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 6 | 125.43 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 9 | 125.68 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 14 | 125.97 | temperature | 20 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 15 | 125.99 | temperature | 20 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 36 | 126.12 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 54 | 126.18 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 57 | 126.19 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 59 | 126.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 63 | 126.21 | temperature | 20 | 43200 | > th | dose dependent | sin | 13 | NA |
| 74 | 126.22 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 102 | 126.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 185 | 126.38 | temperature | 25 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 208 | 126.40 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 212 | 126.40 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 224 | 126.41 | temperature | 20 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 233 | 126.41 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 240 | 126.42 | temperature | 20 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 252 | 126.42 | temperature | 20 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 257 | 126.42 | temperature | 20 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 259 | 126.43 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 296 | 126.45 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 356 | 126.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 382 | 126.50 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 398 | 126.51 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 449 | 126.55 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 477 | 126.58 | temperature | 25 | 43200 | < th | dose independent | sin | 16 | NA |
| 500 | 126.60 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 559 | 126.64 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 573 | 126.65 | temperature | 25 | 43200 | > th | dose independent | sin | 16 | NA |
| 618 | 126.68 | temperature | 25 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 638 | 126.69 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 652 | 126.70 | temperature | 15 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 746 | 126.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 763 | 126.76 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 888 | 126.83 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 892 | 126.83 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 901 | 126.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 930 | 126.84 | temperature | 30 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 935 | 126.85 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 983 | 126.87 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 7 |