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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0131200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, DHHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0345) R2 : 0.206
β1 : 0.467 (0.125) R2dD : 0.0275 R2D : -0.0108
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.28 (0.603) R2dE : 1.4 R2E : -1.17
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.1 (1.31) R2dD*E : 1.26 R2D*E : -1.11
γ1 : 0.151 (0.0708) R2dN8 : 0.0108 R2N8 : -0.0196
σ : 0.614
deviance : 173.83
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.98
memory length : 102
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.07
open length of G : 12.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.24 0.615 2.97 0.461 0.208 5.9 0.347 12.3 0.154 17.1 20.05 96 7.05 12
208.8 0.678 2.88 0.361 0.0471 0.851 0.909 -- 0.157 13.8 20.05 96 7.05 12
171.35 0.61 2.98 0.47 0.224 6.04 -- 12.6 0.155 17.8 20 95 7.06 12
203.79 0.669 2.87 0.413 0.184 1.06 -- -- 0.176 18.6 19.81 16 7.58 14.2
173.83 0.614 2.98 0.467 -- 6.28 -- 13.1 0.151 -- 19.98 102 7.07 12.1
213.95 0.686 2.88 0.27 0.184 -- 0.393 -- 0.129 16.4 -- -- -- --
214.02 0.685 2.88 0.272 0.207 -- -- -- 0.131 17.9 -- -- -- --
205.55 0.671 2.87 0.411 -- 1.08 -- -- 0.173 -- 19.81 16 7.58 14.2
208.06 0.675 2.89 -- 0.182 0.907 -- -- 0.126 18.6 19.88 11 7.4 13.7
216.24 0.687 2.88 0.266 -- -- -- -- 0.126 -- -- -- -- --
215.97 0.687 2.89 -- 0.203 -- -- -- 0.101 17.9 -- -- -- --
209.78 0.675 2.88 -- -- 0.933 -- -- 0.123 -- 19.89 11 7.7 14.2
218.1 0.689 2.89 -- -- -- -- -- 0.0969 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.19 temperature 20 90 < th dose dependent rect. 7 13
2 173.22 temperature 20 90 < th dose independent rect. 7 12
8 175.95 temperature 20 90 < th dose independent rect. 6 14
22 183.62 temperature 20 90 < th dose dependent rect. 8 1
24 184.05 humidity 80 270 < th dose independent rect. 4 4
25 184.50 temperature 20 90 < th dose independent rect. 7 9
27 184.52 temperature 20 10 < th dose dependent rect. 7 9
31 184.58 wind 5 10 > th dose independent rect. 8 1
34 184.58 wind 5 10 > th dose dependent rect. 8 1
38 184.64 temperature 20 90 < th dose independent rect. 7 3
45 184.73 temperature 20 10 < th dose independent rect. 7 10
56 184.82 temperature 20 10 < th dose independent rect. 8 2
64 184.82 temperature 20 10 < th dose dependent rect. 8 2
174 187.01 humidity 80 1440 < th dose dependent rect. 6 1
189 188.26 wind 5 4320 < th dose independent rect. 20 1
192 189.03 wind 5 4320 > th dose independent rect. 20 1
193 189.49 wind 5 1440 < th dose independent rect. 12 1
195 189.65 wind 5 4320 < th dose independent rect. 20 3
199 189.78 wind 5 4320 > th dose independent rect. 20 3
202 189.92 wind 5 1440 > th dose independent rect. 12 1
204 190.28 humidity 80 1440 < th dose independent rect. 6 1
205 190.31 wind 3 4320 > th dose dependent rect. 20 1
206 190.35 humidity 80 270 < th dose dependent rect. 6 1
222 191.36 humidity 90 1440 < th dose dependent rect. 4 2
225 191.50 radiation 10 30 < th dose independent rect. 7 6
227 191.61 wind 5 4320 > th dose dependent rect. 19 6
243 192.17 humidity 90 270 < th dose dependent rect. 4 4
265 192.81 wind 5 1440 > th dose independent rect. 19 19
267 192.82 humidity 80 1440 > th dose independent rect. 5 2
275 192.95 temperature 20 270 > th dose independent sin 0 NA
279 192.99 wind 5 1440 < th dose independent rect. 19 19
305 193.41 humidity 80 270 < th dose independent rect. 22 10
330 193.79 temperature 20 270 < th dose independent sin 0 NA
333 193.80 wind 3 90 > th dose dependent rect. 6 1
380 194.52 temperature 20 1440 > th dose independent rect. 18 1
417 195.14 humidity 50 1440 > th dose dependent rect. 2 4
428 195.25 humidity 90 1440 < th dose dependent rect. 23 7
431 195.30 humidity 70 1440 > th dose dependent rect. 2 1
451 195.56 humidity 70 1440 > th dose dependent rect. 4 2
452 195.57 humidity 50 1440 > th dose dependent rect. 4 2
455 195.58 wind 3 1440 > th dose dependent rect. 12 1
483 195.73 temperature 20 270 < th dose independent rect. 3 20
489 195.80 wind 7 1440 > th dose independent rect. 8 1
491 195.80 wind 5 1440 > th dose dependent rect. 18 16
495 195.83 wind 5 1440 > th dose independent rect. 19 15
506 195.94 atmosphere 1005 14400 < th dose independent rect. 22 2
527 196.03 wind 9 4320 < th dose dependent rect. 20 1
532 196.08 temperature 20 4320 > th dose independent rect. 20 4
533 196.08 wind 5 1440 < th dose independent rect. 19 15
535 196.08 temperature 25 1440 < th dose dependent rect. 11 1
543 196.15 atmosphere 1005 14400 < th dose independent rect. 21 4
547 196.17 atmosphere 1005 14400 > th dose independent rect. 22 1
558 196.21 temperature 20 270 < th dose independent rect. 24 20
565 196.24 temperature 20 1440 > th dose independent rect. 18 12
566 196.24 temperature 25 270 < th dose dependent rect. 24 20
580 196.28 temperature 20 1440 > th dose independent rect. 13 17
582 196.31 temperature 30 10 < th dose dependent rect. 15 21
590 196.35 temperature 20 1440 < th dose independent rect. 18 1
597 196.37 temperature 20 1440 > th dose independent rect. 3 20
598 196.37 temperature 20 1440 > th dose independent rect. 10 20
629 196.51 temperature 25 270 < th dose dependent rect. 3 17
633 196.53 temperature 20 4320 > th dose independent rect. 18 7
635 196.54 wind 5 1440 < th dose independent rect. 8 6
651 196.60 temperature 20 1440 > th dose dependent rect. 24 1
652 196.61 atmosphere 995 14400 > th dose independent rect. 17 4
663 196.65 humidity 80 720 > th dose independent rect. 1 6
666 196.65 temperature 25 10 < th dose dependent sin 23 NA
685 196.72 temperature 20 1440 > th dose dependent rect. 2 1
687 196.73 temperature 20 1440 > th dose dependent rect. 24 4
688 196.73 temperature 20 1440 > th dose dependent rect. 22 7
696 196.76 atmosphere 995 14400 > th dose independent rect. 17 1
731 196.81 temperature 20 270 < th dose independent rect. 3 22
744 196.85 temperature 20 4320 > th dose independent rect. 13 12
745 196.85 temperature 20 720 > th dose independent rect. 18 19
764 196.89 temperature 20 1440 < th dose independent rect. 18 12
779 196.92 radiation 10 10 < th dose independent rect. 10 2
792 196.94 temperature 20 1440 < th dose independent rect. 13 17
810 196.97 temperature 30 270 < th dose dependent rect. 14 18
811 196.97 temperature 10 720 > th dose dependent rect. 18 19
812 196.97 temperature 25 720 < th dose dependent rect. 6 20
814 196.98 wind 5 1440 > th dose independent rect. 8 6
818 196.99 temperature 20 4320 < th dose independent rect. 18 7
822 197.00 humidity 80 720 > th dose independent rect. 23 8
827 197.01 radiation 10 10 < th dose dependent rect. 10 2
830 197.02 temperature 20 4320 < th dose independent rect. 20 4
834 197.02 temperature 20 1440 < th dose independent rect. 10 20
838 197.02 radiation 10 10 < th dose dependent rect. 12 1
843 197.03 temperature 20 1440 < th dose independent rect. 3 20
868 197.08 temperature 20 1440 > th dose independent sin 15 NA
919 197.18 temperature 20 1440 > th dose independent rect. 18 23
951 197.22 wind 3 1440 > th dose dependent rect. 19 19
964 197.24 temperature 20 4320 < th dose independent rect. 13 12
997 197.28 temperature 10 720 > th dose dependent rect. 10 21