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Os12g0130900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.79 (0.018) R2 : 0.436
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.883 (0.0472) R2dC : 0.435 R2C : 0.434
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0387 (0.0379) R2dN8 : 0.00167 R2N8 : 0.00031
σ : 0.34
deviance : 52.72
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.23 0.263 8.76 0.894 0.889 0.263 0.49 -0.452 0.125 18.3 19.34 1421 -- --
31.7 0.262 8.76 0.883 0.886 0.258 0.455 -- 0.119 18.3 16.95 1400 -- --
31.79 0.263 8.76 0.89 0.887 0.267 -- -0.45 0.125 18.3 19.39 1401 -- --
32.29 0.265 8.76 0.876 0.883 0.254 -- -- 0.118 18.4 16.88 1400 -- --
73.25 0.399 8.76 0.893 -- 0.263 -- -0.439 0.128 -- 19.4 1416 -- --
34.14 0.274 8.78 0.831 0.892 -- 0.507 -- 0.0515 18.2 -- -- -- --
34.77 0.276 8.77 0.825 0.894 -- -- -- 0.0532 18.2 -- -- -- --
73.51 0.399 8.76 0.815 -- 0.277 -- -- 0.114 -- 19.39 1420 -- --
38.78 0.29 8.79 -- 0.852 0.508 -- -- -0.0932 18.6 58.8 34069 -- --
76.25 0.408 8.76 0.801 -- -- -- -- 0.0337 -- -- -- -- --
52.72 0.34 8.79 -- 0.883 -- -- -- -0.0387 18.3 -- -- -- --
78.48 0.413 8.81 -- -- 0.548 -- -- -0.174 -- 59.29 33150 -- --
93.17 0.451 8.78 -- -- -- -- -- -0.0552 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.80 humidity 80.0 720 < th dose dependent rect. 19 12
4 29.95 humidity 80.0 720 < th dose dependent rect. 19 8
15 30.24 wind 3.0 43200 < th dose dependent rect. 23 6
20 30.33 precipitation 0.1 14400 > th dose independent rect. 17 1
21 30.34 wind 1.0 43200 > th dose dependent rect. 23 5
26 30.37 radiation 40.0 1440 > th dose dependent rect. 14 19
31 30.45 precipitation 0.1 14400 > th dose dependent rect. 17 1
32 30.45 wind 5.0 43200 < th dose dependent rect. 1 2
33 30.45 wind 1.0 43200 > th dose dependent rect. 24 3
35 30.49 precipitation 0.1 14400 < th dose independent rect. 17 1
36 30.49 precipitation 0.1 14400 < th dose dependent rect. 17 1
39 30.51 temperature 20.0 720 > th dose independent rect. 21 5
45 30.55 wind 1.0 43200 > th dose dependent rect. 1 1
82 30.70 temperature 20.0 4320 < th dose independent rect. 20 1
83 30.70 wind 3.0 43200 < th dose independent rect. 24 2
89 30.72 wind 7.0 14400 > th dose dependent rect. 10 1
90 30.72 radiation 40.0 1440 > th dose dependent rect. 14 1
92 30.73 temperature 20.0 1440 > th dose independent rect. 21 1
97 30.76 radiation 10.0 1440 < th dose independent rect. 15 3
102 30.77 temperature 20.0 720 < th dose independent rect. 24 1
103 30.78 wind 7.0 14400 > th dose independent rect. 10 1
105 30.78 wind 3.0 43200 < th dose independent rect. 22 6
129 30.79 wind 3.0 43200 < th dose dependent rect. 4 2
135 30.81 wind 3.0 1440 < th dose independent rect. 8 1
139 30.82 temperature 20.0 720 < th dose independent rect. 23 4
141 30.82 temperature 25.0 90 < th dose independent rect. 3 10
142 30.82 wind 9.0 4320 > th dose independent rect. 17 13
144 30.83 wind 7.0 14400 < th dose independent rect. 10 1
157 30.84 radiation 10.0 1440 < th dose independent rect. 15 12
167 30.85 radiation 10.0 1440 < th dose independent rect. 15 10
172 30.86 wind 7.0 14400 > th dose independent rect. 6 1
180 30.87 temperature 20.0 1440 < th dose independent rect. 20 5
198 30.88 humidity 70.0 720 > th dose dependent rect. 19 6
204 30.90 wind 3.0 43200 > th dose independent rect. 24 2
206 30.90 wind 3.0 1440 < th dose dependent rect. 8 1
217 30.92 wind 7.0 14400 < th dose independent rect. 6 1
219 30.92 wind 9.0 4320 < th dose independent rect. 17 12
244 30.95 wind 9.0 4320 < th dose independent rect. 17 16
251 30.96 wind 3.0 43200 > th dose independent rect. 22 6
261 30.97 wind 3.0 1440 > th dose independent rect. 8 1
291 30.98 wind 9.0 4320 > th dose dependent rect. 17 14
294 30.99 radiation 10.0 1440 < th dose independent sin 16 NA
304 31.00 wind 7.0 14400 < th dose independent rect. 10 3
367 31.04 temperature 20.0 30 > th dose dependent rect. 23 17
369 31.04 temperature 15.0 10 > th dose dependent rect. 6 23
371 31.05 wind 7.0 14400 > th dose dependent rect. 6 1
383 31.06 temperature 20.0 720 > th dose independent rect. 20 13
418 31.09 atmosphere 1005.0 14400 < th dose independent rect. 14 1
427 31.09 temperature 15.0 270 > th dose dependent sin 6 NA
428 31.09 humidity 90.0 720 < th dose dependent sin 11 NA
440 31.10 wind 9.0 4320 > th dose dependent sin 12 NA
476 31.13 temperature 20.0 1440 > th dose independent sin 17 NA
478 31.13 temperature 20.0 4320 < th dose independent rect. 16 6
483 31.13 temperature 25.0 90 < th dose independent rect. 3 14
502 31.14 temperature 20.0 720 > th dose independent rect. 20 21
504 31.14 temperature 30.0 270 < th dose dependent rect. 1 12
507 31.15 wind 3.0 43200 < th dose independent rect. 22 1
527 31.16 wind 3.0 43200 > th dose independent rect. 22 1
528 31.16 humidity 80.0 1440 > th dose independent rect. 6 1
554 31.17 wind 3.0 43200 > th dose independent rect. 8 1
557 31.17 wind 9.0 4320 > th dose independent rect. 17 4
558 31.17 wind 9.0 4320 < th dose independent rect. 17 4
570 31.17 wind 7.0 14400 > th dose dependent rect. 10 3
576 31.18 wind 9.0 4320 > th dose independent sin 12 NA
583 31.18 temperature 25.0 90 < th dose independent rect. 3 20
584 31.18 temperature 20.0 720 > th dose independent rect. 6 21
592 31.18 radiation 20.0 4320 > th dose dependent rect. 16 16
613 31.19 temperature 20.0 30 > th dose dependent rect. 1 15
615 31.20 atmosphere 995.0 14400 < th dose independent rect. 14 1
624 31.20 atmosphere 995.0 14400 > th dose independent rect. 10 6
626 31.20 atmosphere 995.0 14400 > th dose independent rect. 8 7
640 31.20 atmosphere 995.0 14400 < th dose dependent rect. 15 1
648 31.21 atmosphere 995.0 14400 > th dose independent rect. 15 1
651 31.21 humidity 80.0 720 < th dose independent rect. 19 3
662 31.21 humidity 80.0 720 > th dose independent rect. 19 8
692 31.22 temperature 25.0 90 < th dose independent sin 4 NA
708 31.22 humidity 80.0 720 < th dose independent rect. 18 13
731 31.22 radiation 20.0 1440 < th dose dependent rect. 9 9
742 31.22 radiation 20.0 1440 < th dose dependent rect. 9 16
756 31.23 temperature 25.0 10 < th dose independent rect. 4 10
757 31.23 wind 3.0 43200 < th dose independent rect. 22 11
758 31.23 temperature 25.0 270 < th dose independent rect. 1 11
769 31.23 humidity 60.0 720 > th dose dependent sin 13 NA
770 31.23 radiation 1.0 1440 > th dose dependent rect. 11 1
774 31.23 radiation 1.0 1440 > th dose dependent rect. 9 9
790 31.24 temperature 20.0 1440 < th dose independent sin 17 NA
791 31.24 humidity 80.0 720 > th dose independent sin 13 NA
863 31.25 wind 3.0 43200 < th dose independent rect. 8 1
881 31.25 temperature 20.0 720 > th dose independent rect. 13 20
882 31.25 temperature 20.0 720 < th dose independent rect. 6 21
934 31.26 radiation 40.0 1440 < th dose independent rect. 14 18
973 31.27 radiation 40.0 1440 < th dose independent rect. 14 6
986 31.27 humidity 80.0 720 > th dose independent rect. 19 13
988 31.27 wind 3.0 43200 < th dose independent rect. 22 15
990 31.27 temperature 25.0 90 < th dose independent rect. 3 16
998 31.27 radiation 1.0 1440 > th dose dependent sin 18 NA