Os12g0130500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0130500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.48 | 0.704 | 3.35 | 2.54 | 1.03 | -1.28 | 3.81 | 1.57 | 0.567 | 21.5 | 24.3 | 2225 | -- | -- |
| 223.21 | 0.696 | 3.32 | 2.74 | 0.833 | -1.47 | 3.86 | -- | 0.817 | 21.3 | 17.51 | 10814 | -- | -- |
| 276.5 | 0.774 | 3.3 | 2.87 | 1.02 | -1.36 | -- | 3.15 | 0.678 | 21.2 | 24.07 | 2201 | -- | -- |
| 275.91 | 0.774 | 3.31 | 2.4 | 0.826 | -1.3 | -- | -- | 0.802 | 21.5 | 18.64 | 10284 | -- | -- |
| 311.77 | 0.827 | 3.42 | 1.45 | -- | -1.16 | -- | -2.73 | 0.376 | -- | 18.14 | 4504 | -- | -- |
| 263.15 | 0.76 | 3.43 | 1.78 | 0.814 | -- | 3.78 | -- | 0.313 | 21.4 | -- | -- | -- | -- |
| 315.19 | 0.831 | 3.43 | 1.64 | 0.8 | -- | -- | -- | 0.309 | 21.4 | -- | -- | -- | -- |
| 315.23 | 0.827 | 3.31 | 2.25 | -- | -1.11 | -- | -- | 0.747 | -- | 21.75 | 10226 | -- | -- |
| 363.4 | 0.888 | 3.52 | -- | 0.79 | 0.773 | -- | -- | -0.105 | 21.4 | 4.784 | 47520 | -- | -- |
| 352.55 | 0.877 | 3.41 | 1.65 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 386.48 | 0.92 | 3.47 | -- | 0.801 | -- | -- | -- | 0.125 | 21.5 | -- | -- | -- | -- |
| 399.92 | 0.931 | 3.5 | -- | -- | 0.793 | -- | -- | -0.115 | -- | 5.125 | 47520 | -- | -- |
| 424.25 | 0.961 | 3.45 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.36 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 8 | 223.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 18 | 223.83 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 21 | 223.91 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 25 | 223.96 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 27 | 223.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 28 | 223.99 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 38 | 224.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 52 | 224.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 57 | 224.52 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 58 | 224.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 65 | 224.61 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 151 | 225.22 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 164 | 225.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 188 | 225.35 | radiation | 30 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 237 | 225.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 270 | 225.56 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 327 | 225.65 | temperature | 10 | 14400 | > th | dose dependent | sin | 16 | NA |
| 368 | 225.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 448 | 225.85 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 501 | 225.94 | temperature | 30 | 14400 | < th | dose dependent | sin | 16 | NA |
| 521 | 225.98 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 527 | 225.99 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 559 | 226.03 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 594 | 226.06 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 609 | 226.08 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 627 | 226.11 | temperature | 10 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 655 | 226.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 669 | 226.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 685 | 226.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 16 |
| 717 | 226.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 729 | 226.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 783 | 226.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 803 | 226.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 16 |
| 830 | 226.34 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 876 | 226.39 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 882 | 226.40 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 960 | 226.49 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 969 | 226.50 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 972 | 226.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |