FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0128300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0372) R2 : 0.0127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.0783) R2dN8 : 0.0164 R2N8 : 0.0127
σ : 0.7
deviance : 225.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
202.46 0.669 4.06 -0.832 0.301 0.462 -0.368 -1.45 -0.00953 9.78 40.4 754 -- --
205.71 0.668 4.04 -0.701 0.318 0.403 -0.203 -- 0.0532 9.8 42.83 764 -- --
202.94 0.663 4.06 -0.835 0.306 0.465 -- -1.32 -0.00695 9.69 40.43 754 -- --
205.69 0.668 4.04 -0.713 0.295 0.366 -- -- 0.0659 10 42.97 774 -- --
204.89 0.667 4.04 -0.706 -- 0.481 -- -1.49 0.0581 -- 40.4 355 -- --
208.73 0.677 4.03 -0.661 0.243 -- -0.354 -- 0.121 13.5 -- -- -- --
209.23 0.677 4.03 -0.673 0.242 -- -- -- 0.119 13.4 -- -- -- --
207.47 0.671 4.04 -0.68 -- 0.571 -- -- 0.0762 -- 45.76 314 -- --
217.85 0.687 4.03 -- 0.293 0.38 -- -- 0.128 10.1 45.98 790 -- --
212.84 0.682 4.04 -0.683 -- -- -- -- 0.114 -- -- -- -- --
221.18 0.696 4.02 -- 0.254 -- -- -- 0.194 13.5 -- -- -- --
218.96 0.689 4.02 -- -- 0.718 -- -- 0.174 -- 49.7 265 -- --
225.15 0.7 4.02 -- -- -- -- -- 0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.44 temperature 20.0 30 > th dose dependent rect. 2 7
3 192.60 temperature 20.0 720 > th dose dependent rect. 2 1
6 193.47 temperature 10.0 720 > th dose dependent rect. 2 1
14 194.31 temperature 25.0 270 > th dose independent rect. 1 7
28 196.05 temperature 25.0 30 > th dose independent rect. 4 5
69 197.39 atmosphere 1005.0 30 > th dose dependent rect. 2 7
70 197.45 temperature 25.0 720 > th dose independent rect. 2 1
86 197.73 temperature 25.0 720 < th dose dependent rect. 23 3
90 197.85 temperature 25.0 720 < th dose dependent rect. 1 1
100 198.03 temperature 10.0 30 > th dose dependent rect. 2 12
117 198.34 atmosphere 1000.0 720 > th dose independent rect. 2 1
122 198.47 temperature 25.0 4320 > th dose independent rect. 1 2
126 198.54 temperature 10.0 720 > th dose dependent rect. 21 8
180 199.07 temperature 25.0 270 < th dose dependent rect. 23 11
185 199.17 atmosphere 1005.0 270 > th dose dependent rect. 23 8
201 199.38 temperature 25.0 270 < th dose dependent rect. 1 9
204 199.42 temperature 20.0 270 > th dose dependent rect. 6 1
258 199.88 temperature 25.0 270 < th dose dependent sin 7 NA
273 199.95 temperature 30.0 720 < th dose dependent rect. 21 9
303 200.14 temperature 25.0 10 > th dose dependent rect. 21 12
344 200.38 atmosphere 1005.0 30 > th dose independent rect. 2 7
367 200.48 atmosphere 995.0 30 > th dose dependent rect. 14 12
392 200.60 temperature 20.0 720 > th dose dependent sin 11 NA
407 200.67 atmosphere 1000.0 30 > th dose independent rect. 13 1
425 200.73 wind 7.0 4320 < th dose independent rect. 6 1
428 200.74 atmosphere 1005.0 30 > th dose independent rect. 2 9
430 200.75 atmosphere 1005.0 30 > th dose independent rect. 14 12
437 200.77 atmosphere 995.0 30 > th dose dependent rect. 13 1
441 200.78 temperature 25.0 720 > th dose dependent rect. 21 1
449 200.80 temperature 30.0 720 > th dose independent rect. 13 1
451 200.80 temperature 30.0 720 < th dose independent rect. 6 8
458 200.84 atmosphere 1000.0 30 > th dose independent rect. 2 12
459 200.84 temperature 20.0 270 > th dose dependent sin 8 NA
461 200.85 wind 3.0 10 < th dose independent rect. 2 1
475 200.88 temperature 25.0 10 < th dose independent rect. 2 1
477 200.89 wind 1.0 30 > th dose independent rect. 2 1
481 200.90 wind 9.0 720 < th dose independent rect. 18 8
500 200.95 atmosphere 1005.0 10 > th dose dependent rect. 2 1
505 200.97 wind 9.0 30 < th dose independent rect. 3 23
522 201.02 atmosphere 995.0 1440 > th dose independent rect. 17 1
523 201.02 temperature 25.0 720 > th dose independent rect. 20 12
531 201.05 precipitation 0.1 720 < th dose independent rect. 6 8
532 201.05 radiation 1.0 10 > th dose independent rect. 9 21
533 201.05 precipitation 0.1 720 < th dose dependent rect. 6 8
542 201.07 temperature 15.0 30 > th dose independent rect. 3 23
558 201.10 temperature 20.0 10 > th dose dependent rect. 2 1
564 201.11 temperature 20.0 90 > th dose independent rect. 1 13
575 201.14 wind 5.0 10 < th dose dependent rect. 2 1
576 201.14 temperature 10.0 10 > th dose dependent rect. 2 1
578 201.14 atmosphere 995.0 10 > th dose dependent rect. 2 1
588 201.16 wind 9.0 30 < th dose independent rect. 2 1
589 201.16 temperature 10.0 30 > th dose independent rect. 2 1
592 201.16 humidity 50.0 30 > th dose independent rect. 2 1
595 201.16 atmosphere 995.0 30 > th dose independent rect. 2 1
596 201.16 atmosphere 1010.0 30 < th dose independent rect. 2 1
598 201.16 radiation 1.0 30 < th dose independent rect. 2 1
603 201.16 precipitation 0.1 30 < th dose independent rect. 2 1
605 201.16 temperature 30.0 30 < th dose dependent rect. 2 1
606 201.16 radiation 1.0 30 < th dose dependent rect. 2 1
611 201.16 precipitation 0.1 30 < th dose dependent rect. 2 1
616 201.17 radiation 30.0 720 > th dose independent rect. 14 1
623 201.17 atmosphere 1015.0 30 < th dose dependent rect. 2 1
667 201.21 humidity 50.0 30 > th dose dependent rect. 2 1
670 201.22 atmosphere 1005.0 30 > th dose independent rect. 2 1
683 201.24 humidity 90.0 30 > th dose independent rect. 2 1
687 201.25 humidity 90.0 30 > th dose dependent rect. 2 1
692 201.26 temperature 10.0 720 > th dose independent rect. 18 8
693 201.26 humidity 50.0 720 > th dose independent rect. 18 8
694 201.26 radiation 20.0 720 < th dose independent rect. 18 8
697 201.26 temperature 10.0 720 > th dose independent rect. 2 16
709 201.30 temperature 25.0 4320 < th dose independent rect. 1 1
710 201.30 radiation 30.0 270 > th dose independent rect. 14 18
720 201.32 precipitation 0.1 720 < th dose independent rect. 18 8
722 201.32 precipitation 0.1 720 < th dose dependent rect. 18 8
730 201.34 humidity 50.0 720 > th dose independent rect. 6 8
778 201.47 temperature 10.0 720 > th dose independent rect. 6 8
779 201.47 atmosphere 995.0 720 > th dose independent rect. 6 8
780 201.47 atmosphere 1015.0 720 < th dose independent rect. 6 8
781 201.47 temperature 10.0 720 > th dose independent rect. 14 16
784 201.47 radiation 40.0 720 < th dose dependent rect. 18 8
789 201.49 temperature 30.0 30 < th dose independent rect. 14 12
823 201.52 wind 3.0 720 > th dose independent rect. 14 1
829 201.54 wind 9.0 30 < th dose independent rect. 2 12
830 201.55 radiation 1.0 720 > th dose dependent rect. 14 1
836 201.56 temperature 25.0 720 > th dose independent rect. 21 1
838 201.56 radiation 40.0 720 > th dose independent rect. 11 4
873 201.60 atmosphere 1015.0 720 < th dose independent rect. 2 1
884 201.61 radiation 1.0 30 > th dose dependent rect. 16 14
889 201.63 temperature 25.0 270 < th dose independent rect. 21 13
892 201.64 temperature 25.0 720 < th dose dependent sin 11 NA
913 201.69 radiation 40.0 720 > th dose independent sin 16 NA
920 201.70 atmosphere 995.0 30 > th dose independent rect. 14 23
925 201.71 wind 3.0 30 > th dose independent rect. 13 1
942 201.74 temperature 30.0 30 < th dose independent rect. 2 12
951 201.76 humidity 50.0 720 > th dose independent rect. 14 1
953 201.76 radiation 40.0 720 > th dose independent rect. 13 21
954 201.76 wind 5.0 10 > th dose dependent rect. 14 1
995 201.81 precipitation 0.1 720 < th dose independent rect. 2 16
999 201.81 precipitation 0.1 720 < th dose dependent rect. 2 16