FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0125200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0375) R2 : 0.0801
β1 : 0.865 (0.137) R2dD : 0.083 R2D : 0.0747
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.113 (0.08) R2dN8 : 0.00542 R2N8 : -0.00291
σ : 0.704
deviance : 226.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.44 0.64 3.95 1.34 0.907 -0.834 0.035 2.4 0.391 22.5 24.2 179 17.7 9.33
195.5 0.651 3.97 1.26 0.96 -0.855 0.162 -- 0.344 22.2 24.1 179 17.8 9.27
184.92 0.633 3.95 1.33 0.902 -0.862 -- 2.47 0.402 22.6 24.2 172 18 8.97
194.58 0.65 3.96 1.12 0.889 -0.711 -- -- 0.281 22.4 24.15 173 17.9 9.23
216.28 0.689 3.96 1.21 -- -0.249 -- 2.46 0.282 -- 24.3 105 18.5 8.77
212.42 0.683 4.02 0.873 0.484 -- 0.347 -- 0.114 21.8 -- -- -- --
212.88 0.683 4.02 0.86 0.483 -- -- -- 0.114 21.7 -- -- -- --
219.61 0.69 4 0.899 -- -0.548 -- -- 0.2 -- 25.6 420 20 11.7
216.78 0.686 3.98 -- 0.846 -0.775 -- -- 0.202 22.1 25.01 184 17.9 8.94
226.74 0.704 4.01 0.865 -- -- -- -- 0.113 -- -- -- -- --
232.38 0.713 4.04 -- 0.485 -- -- -- 0.0182 21.8 -- -- -- --
241.13 0.723 4.01 -- -- -0.62 -- -- 0.135 -- 25.5 407 20.1 11.5
246.46 0.733 4.03 -- -- -- -- -- 0.0174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.88 temperature 20.0 30 > th dose dependent rect. 20 8
5 189.30 temperature 25.0 270 > th dose independent rect. 17 9
14 190.33 temperature 25.0 270 > th dose independent rect. 17 13
18 191.02 temperature 20.0 270 > th dose dependent rect. 18 9
36 192.78 temperature 25.0 270 > th dose independent sin 14 NA
49 193.48 temperature 25.0 720 > th dose independent rect. 15 6
77 194.99 temperature 20.0 30 > th dose dependent rect. 4 7
87 195.34 temperature 25.0 270 > th dose dependent rect. 18 12
114 195.74 temperature 25.0 30 < th dose independent rect. 15 11
118 195.79 radiation 30.0 10 < th dose independent rect. 3 8
125 195.89 wind 1.0 10 > th dose independent rect. 12 23
131 196.04 wind 1.0 10 > th dose independent rect. 14 21
148 196.32 radiation 30.0 10 < th dose independent rect. 23 12
158 196.44 temperature 25.0 10 > th dose independent rect. 2 9
177 196.84 temperature 10.0 720 > th dose dependent rect. 3 6
188 197.00 radiation 40.0 10 < th dose independent rect. 14 21
205 197.26 radiation 40.0 10 < th dose dependent rect. 3 23
212 197.39 temperature 25.0 720 > th dose dependent rect. 15 11
218 197.43 temperature 25.0 720 > th dose dependent rect. 15 15
225 197.49 temperature 25.0 720 > th dose independent rect. 11 14
235 197.62 temperature 25.0 270 < th dose independent rect. 14 16
248 197.74 wind 1.0 10 > th dose independent rect. 14 16
256 197.81 temperature 25.0 270 > th dose independent rect. 22 2
273 197.92 atmosphere 1015.0 720 < th dose independent rect. 3 8
278 197.95 wind 9.0 4320 > th dose dependent rect. 13 1
314 198.28 radiation 40.0 10 < th dose dependent rect. 13 22
323 198.42 temperature 25.0 720 > th dose dependent sin 14 NA
348 198.54 temperature 15.0 720 > th dose dependent rect. 3 4
349 198.55 wind 1.0 10 > th dose independent rect. 1 10
353 198.57 wind 9.0 720 < th dose independent rect. 3 8
367 198.63 temperature 25.0 270 > th dose dependent rect. 22 2
369 198.64 radiation 1.0 720 < th dose dependent rect. 15 9
381 198.70 wind 5.0 30 < th dose independent rect. 3 8
391 198.77 temperature 10.0 30 > th dose dependent rect. 11 16
392 198.78 radiation 1.0 720 < th dose independent rect. 15 9
409 198.90 temperature 25.0 10 > th dose dependent rect. 8 3
412 198.95 temperature 25.0 720 > th dose independent rect. 20 1
414 198.95 temperature 10.0 720 > th dose dependent rect. 15 6
415 198.99 temperature 10.0 1440 > th dose independent rect. 4 8
418 198.99 atmosphere 995.0 1440 > th dose independent rect. 4 8
419 198.99 temperature 10.0 1440 > th dose independent rect. 12 16
432 199.07 radiation 10.0 720 > th dose independent rect. 16 1
434 199.07 temperature 30.0 720 < th dose dependent rect. 2 1
436 199.09 humidity 60.0 30 > th dose independent rect. 3 8
443 199.10 wind 1.0 30 < th dose dependent rect. 2 1
463 199.22 atmosphere 995.0 30 > th dose dependent rect. 3 8
465 199.24 wind 1.0 10 > th dose independent rect. 3 8
475 199.29 wind 9.0 4320 > th dose independent rect. 13 1
480 199.32 wind 9.0 4320 < th dose independent rect. 13 1
482 199.34 wind 1.0 10 > th dose independent rect. 23 12
483 199.34 temperature 25.0 720 > th dose dependent rect. 20 1
487 199.37 temperature 30.0 720 < th dose dependent rect. 24 6
492 199.38 humidity 50.0 720 > th dose independent rect. 3 8
493 199.38 temperature 30.0 720 < th dose dependent rect. 1 4
494 199.39 wind 1.0 10 < th dose independent rect. 2 1
496 199.39 temperature 20.0 720 > th dose independent rect. 3 6
498 199.41 temperature 25.0 720 < th dose independent rect. 15 4
513 199.47 temperature 20.0 720 > th dose dependent rect. 18 3
553 199.61 radiation 1.0 720 < th dose independent rect. 6 18
589 199.72 humidity 60.0 720 > th dose dependent rect. 23 1
601 199.74 radiation 20.0 10 < th dose independent rect. 3 23
602 199.75 wind 9.0 4320 > th dose independent rect. 15 1
614 199.78 radiation 1.0 720 < th dose dependent rect. 7 17
620 199.81 radiation 1.0 720 < th dose independent rect. 3 21
629 199.85 temperature 30.0 30 < th dose independent rect. 3 8
650 199.93 temperature 30.0 10 < th dose dependent rect. 2 1
652 199.95 temperature 25.0 10 < th dose independent rect. 2 1
658 199.97 atmosphere 1000.0 10 > th dose independent rect. 2 1
662 199.97 radiation 40.0 10 < th dose dependent rect. 3 8
668 199.99 atmosphere 1005.0 10 > th dose dependent rect. 2 1
673 200.01 atmosphere 1000.0 10 > th dose independent rect. 11 23
676 200.03 temperature 25.0 270 < th dose independent sin 16 NA
677 200.03 atmosphere 1000.0 30 > th dose independent rect. 3 8
692 200.08 humidity 90.0 10 > th dose independent rect. 2 1
698 200.10 temperature 10.0 30 > th dose independent rect. 3 8
702 200.10 atmosphere 1015.0 30 < th dose independent rect. 3 8
705 200.10 temperature 10.0 30 > th dose independent rect. 11 16
711 200.12 humidity 90.0 30 > th dose dependent rect. 2 1
713 200.13 atmosphere 1015.0 30 < th dose independent rect. 11 16
719 200.15 precipitation 0.1 30 < th dose independent rect. 11 16
721 200.15 precipitation 0.1 30 < th dose dependent rect. 11 16
722 200.16 temperature 10.0 720 > th dose independent rect. 15 8
723 200.16 temperature 10.0 720 > th dose independent rect. 23 16
732 200.19 wind 9.0 30 < th dose independent rect. 11 16
740 200.22 atmosphere 995.0 30 > th dose independent rect. 3 23
746 200.25 temperature 15.0 10 > th dose independent rect. 3 23
748 200.25 humidity 50.0 10 > th dose dependent rect. 2 1
750 200.26 wind 9.0 10 < th dose independent rect. 2 1
751 200.26 temperature 10.0 10 > th dose independent rect. 2 1
754 200.26 humidity 50.0 10 > th dose independent rect. 2 1
758 200.26 atmosphere 1010.0 10 < th dose independent rect. 2 1
760 200.26 radiation 1.0 10 < th dose independent rect. 2 1
765 200.26 precipitation 0.1 10 < th dose independent rect. 2 1
771 200.26 radiation 1.0 10 < th dose dependent rect. 2 1
776 200.26 precipitation 0.1 10 < th dose dependent rect. 2 1
779 200.27 wind 7.0 4320 > th dose dependent rect. 15 1
782 200.28 wind 5.0 10 < th dose independent rect. 2 1
798 200.30 wind 9.0 30 < th dose dependent rect. 3 8
802 200.31 radiation 30.0 720 < th dose dependent rect. 15 9
854 200.39 precipitation 0.1 720 < th dose independent rect. 20 16
866 200.39 precipitation 0.1 720 < th dose dependent rect. 20 16
875 200.42 precipitation 0.1 30 < th dose independent rect. 3 8
878 200.42 precipitation 0.1 30 < th dose dependent rect. 3 8
881 200.43 temperature 10.0 10 > th dose dependent rect. 2 1
885 200.44 temperature 20.0 720 > th dose independent rect. 4 3
897 200.47 wind 9.0 10 < th dose independent rect. 3 23
902 200.48 radiation 20.0 10 > th dose independent rect. 11 23
912 200.51 radiation 1.0 720 > th dose independent rect. 15 15
916 200.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
922 200.53 temperature 25.0 720 > th dose dependent rect. 16 1
924 200.54 humidity 70.0 720 > th dose independent rect. 3 6
931 200.55 radiation 1.0 720 > th dose independent rect. 15 21
939 200.57 wind 9.0 30 < th dose dependent rect. 11 16
973 200.67 atmosphere 995.0 30 > th dose independent rect. 14 21
985 200.71 radiation 30.0 10 < th dose independent rect. 21 14