Os12g0124900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0124900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.29 | 0.454 | 3.02 | -0.154 | 0.0849 | 0.919 | -0.296 | -2.27 | -0.00408 | 14.8 | 2.101e-05 | 1371 | -- | -- |
| 95.41 | 0.455 | 3 | -0.102 | 0.0881 | 0.806 | -0.253 | -- | 0.0075 | 14.7 | 0.1001 | 1373 | -- | -- |
| 93.57 | 0.451 | 3.02 | -0.157 | 0.0875 | 0.918 | -- | -2.23 | -0.00436 | 13.8 | 5.271e-06 | 1371 | -- | -- |
| 95.63 | 0.455 | 3 | -0.12 | 0.0842 | 0.797 | -- | -- | -0.00414 | 13.8 | 3.797e-07 | 1373 | -- | -- |
| 94 | 0.452 | 3.02 | -0.157 | -- | 0.92 | -- | -2.22 | -0.00372 | -- | 0.004496 | 1368 | -- | -- |
| 100.31 | 0.47 | 3.01 | 0.015 | 0.0868 | -- | -0.25 | -- | -0.0703 | 13.3 | -- | -- | -- | -- |
| 100.54 | 0.47 | 3.01 | 0.00593 | 0.0888 | -- | -- | -- | -0.0721 | 12.3 | -- | -- | -- | -- |
| 96.08 | 0.457 | 3 | -0.123 | -- | 0.803 | -- | -- | -0.00346 | -- | 0.008142 | 1370 | -- | -- |
| 95.99 | 0.456 | 2.99 | -- | 0.0822 | 0.741 | -- | -- | 0.00278 | 13.9 | 0.04039 | 1372 | -- | -- |
| 101.04 | 0.47 | 3.01 | 0.00299 | -- | -- | -- | -- | -0.0735 | -- | -- | -- | -- | -- |
| 100.54 | 0.469 | 3.01 | -- | 0.0887 | -- | -- | -- | -0.0727 | 12.3 | -- | -- | -- | -- |
| 96.45 | 0.457 | 3 | -- | -- | 0.745 | -- | -- | 0.00408 | -- | 0.176 | 1370 | -- | -- |
| 101.04 | 0.469 | 3.01 | -- | -- | -- | -- | -- | -0.0738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.73 | wind | 7 | 90 | > th | dose independent | rect. | 3 | 6 |
| 4 | 87.74 | wind | 7 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 7 | 87.75 | wind | 7 | 90 | > th | dose independent | rect. | 7 | 2 |
| 13 | 87.76 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 17 | 87.91 | wind | 1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 19 | 88.86 | wind | 1 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 27 | 89.76 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 28 | 89.84 | wind | 1 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 34 | 90.09 | wind | 1 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 44 | 90.68 | humidity | 70 | 270 | < th | dose independent | rect. | 8 | 1 |
| 51 | 91.00 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 54 | 91.13 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 69 | 91.36 | humidity | 80 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 70 | 91.42 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 84 | 91.43 | radiation | 40 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 113 | 91.96 | wind | 1 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 116 | 92.10 | wind | 1 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 118 | 92.12 | humidity | 80 | 270 | < th | dose dependent | rect. | 20 | 13 |
| 140 | 92.56 | wind | 1 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 164 | 93.11 | wind | 1 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 175 | 93.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 189 | 93.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 193 | 93.79 | humidity | 70 | 270 | < th | dose independent | rect. | 19 | 14 |
| 201 | 93.85 | wind | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 204 | 93.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 210 | 93.97 | humidity | 80 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 211 | 93.97 | wind | 1 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 219 | 94.02 | wind | 1 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 224 | 94.05 | wind | 1 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 226 | 94.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 227 | 94.06 | wind | 1 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 232 | 94.08 | wind | 1 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 241 | 94.19 | wind | 7 | 30 | > th | dose independent | rect. | 19 | 3 |
| 261 | 94.24 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 266 | 94.28 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 269 | 94.28 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 303 | 94.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 304 | 94.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 316 | 94.44 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 330 | 94.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 334 | 94.51 | wind | 1 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 374 | 94.64 | wind | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 418 | 94.85 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 421 | 94.86 | wind | 1 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 423 | 94.87 | wind | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 437 | 94.88 | humidity | 70 | 30 | < th | dose dependent | rect. | 9 | 1 |
| 455 | 94.93 | humidity | 50 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 571 | 95.06 | humidity | 60 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 596 | 95.08 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 675 | 95.09 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 803 | 95.13 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 849 | 95.17 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 968 | 95.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 1 |