Os12g0124300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0124300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.05 | 0.477 | 8.9 | -0.984 | 0.235 | 0.132 | -0.415 | 6.87 | -0.541 | 12.3 | 29.8 | 4031 | -- | -- |
| 107.87 | 0.484 | 8.79 | 0.181 | 0.24 | 0.839 | -0.0518 | -- | -0.56 | 12.4 | 30.3 | 2663 | -- | -- |
| 103.64 | 0.474 | 8.9 | -1.04 | 0.241 | 0.144 | -- | 6.77 | -0.557 | 11.6 | 29.69 | 4039 | -- | -- |
| 106.75 | 0.481 | 8.77 | 0.219 | 0.241 | 0.841 | -- | -- | -0.502 | 11.9 | 31.4 | 2668 | -- | -- |
| 107.17 | 0.482 | 8.9 | -1.02 | -- | 0.196 | -- | 6.68 | -0.557 | -- | 29.7 | 4030 | -- | -- |
| 136.19 | 0.547 | 8.73 | 0.0147 | 0.311 | -- | -0.237 | -- | -0.33 | 12.4 | -- | -- | -- | -- |
| 136.42 | 0.547 | 8.73 | 0.00519 | 0.312 | -- | -- | -- | -0.332 | 12.3 | -- | -- | -- | -- |
| 109.74 | 0.488 | 8.77 | 0.235 | -- | 0.861 | -- | -- | -0.495 | -- | 31.4 | 2630 | -- | -- |
| 108.08 | 0.484 | 8.77 | -- | 0.225 | 0.796 | -- | -- | -0.509 | 11.7 | 31.4 | 2666 | -- | -- |
| 142.54 | 0.558 | 8.74 | -0.0051 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 136.42 | 0.546 | 8.73 | -- | 0.312 | -- | -- | -- | -0.333 | 12.3 | -- | -- | -- | -- |
| 111.12 | 0.491 | 8.78 | -- | -- | 0.835 | -- | -- | -0.521 | -- | 31.43 | 2630 | -- | -- |
| 142.54 | 0.557 | 8.74 | -- | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 2 | 103.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 9 | 103.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 11 |
| 13 | 103.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 40 | 103.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 56 | 103.46 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 77 | 103.53 | temperature | 30 | 4320 | < th | dose independent | sin | 4 | NA |
| 155 | 103.68 | temperature | 30 | 4320 | > th | dose independent | sin | 4 | NA |
| 158 | 103.71 | temperature | 30 | 90 | < th | dose independent | rect. | 8 | 18 |
| 207 | 103.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 21 |
| 221 | 103.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 230 | 103.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 12 |
| 301 | 103.98 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 383 | 104.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 414 | 104.04 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 426 | 104.07 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 546 | 104.11 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 605 | 104.18 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 672 | 104.31 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 774 | 104.46 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 19 |
| 776 | 104.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 779 | 104.48 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 835 | 104.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 872 | 104.64 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 21 |
| 984 | 104.76 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 991 | 104.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 20 |
| 995 | 104.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 23 |