Os12g0123700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : No apical meristem (NAM) protein domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0123700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : No apical meristem (NAM) protein domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 227.22 | 0.708 | 7.06 | 0.99 | 0.418 | -1.89 | -4.77 | -5.24 | -0.529 | 4.81 | 10.62 | 79 | 7.17 | 19.9 |
| 240.33 | 0.722 | 7.01 | 1.25 | 0.488 | -1.74 | -2.47 | -- | -0.457 | 5 | 7.497 | 37 | 7.75 | 19.6 |
| 248.8 | 0.735 | 6.99 | 1.15 | 0.524 | -1.7 | -- | 0.869 | -0.44 | 3.62 | -1.585 | 16 | 7.9 | 19.8 |
| 249.58 | 0.736 | 7.01 | 1.21 | 0.501 | -1.67 | -- | -- | -0.463 | 3.35 | -2.179 | 15 | 7.92 | 19.8 |
| 255.73 | 0.745 | 6.99 | 1.31 | -- | -2.11 | -- | 0.732 | -0.409 | -- | 1.124 | 18 | 7.9 | 19.8 |
| 294.98 | 0.805 | 7.01 | 1.09 | 1.66 | -- | -1.68 | -- | -0.555 | 4.58 | -- | -- | -- | -- |
| 302.42 | 0.814 | 7.01 | 1.1 | 1.65 | -- | -- | -- | -0.546 | 4.49 | -- | -- | -- | -- |
| 256.39 | 0.746 | 7 | 1.28 | -- | -2.1 | -- | -- | -0.429 | -- | 2.337 | 16 | 7.9 | 19.8 |
| 287.35 | 0.79 | 7.03 | -- | 0.666 | -1.45 | -- | -- | -0.582 | 3.65 | -5.089 | 14 | 7.92 | 19.8 |
| 447.68 | 0.989 | 7.02 | 1.16 | -- | -- | -- | -- | -0.503 | -- | -- | -- | -- | -- |
| 334.21 | 0.855 | 7.03 | -- | 1.67 | -- | -- | -- | -0.669 | 4.47 | -- | -- | -- | -- |
| 297.67 | 0.804 | 7.04 | -- | -- | -1.96 | -- | -- | -0.595 | -- | -8.956 | 35 | 7.76 | 19.7 |
| 483.33 | 1.03 | 7.05 | -- | -- | -- | -- | -- | -0.632 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 223.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 3 | 226.59 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 6 | 227.43 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 7 | 227.62 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 8 | 227.84 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 10 | 228.60 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 15 |
| 32 | 230.60 | wind | 3 | 14400 | < th | dose dependent | sin | 4 | NA |
| 60 | 232.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 76 | 232.97 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 83 | 233.19 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 95 | 233.62 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 109 | 233.64 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 12 |
| 129 | 234.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 146 | 234.47 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 154 | 234.72 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 158 | 234.83 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 167 | 234.95 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 194 | 235.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 211 | 235.46 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 225 | 235.77 | wind | 3 | 14400 | < th | dose independent | sin | 4 | NA |
| 226 | 235.77 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 232 | 235.89 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 321 | 237.37 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 325 | 237.43 | wind | 3 | 14400 | > th | dose independent | sin | 4 | NA |
| 343 | 237.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 393 | 238.25 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 399 | 238.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 418 | 238.41 | wind | 3 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 428 | 238.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 433 | 238.54 | humidity | 80 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 445 | 238.66 | humidity | 80 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 474 | 238.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 493 | 239.04 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 511 | 239.15 | humidity | 80 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 513 | 239.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 523 | 239.24 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 590 | 239.59 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 627 | 239.73 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 628 | 239.74 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 629 | 239.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 632 | 239.76 | humidity | 50 | 43200 | > th | dose dependent | rect. | 3 | 2 |
| 664 | 239.90 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 670 | 239.95 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 677 | 240.03 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 679 | 240.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 727 | 240.30 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 736 | 240.35 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 20 |
| 752 | 240.44 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 763 | 240.46 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 845 | 240.83 | wind | 3 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 865 | 240.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 893 | 241.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 903 | 241.10 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 922 | 241.16 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 954 | 241.29 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 17 |
| 973 | 241.35 | humidity | 50 | 43200 | > th | dose independent | sin | 3 | NA |