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Os12g0123500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Apyrase precursor (EC 3.6.1.5) (ATP-diphosphatase) (Adenosine diphosphatase) (ADPase) (ATP-diphosphohydrolase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0588) R2 : 0.715
β1 : -5.93 (0.249) R2dD : 0.819 R2D : -0.428
β2 : 0.896 (0.11) R2dC : 0.0418 R2C : -0.015
β3 : -3.54 (0.171) R2dE : 0.462 R2E : 0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.75 (0.636) R2dD*E : 0.268 R2D*E : 0.0709
γ1 : -0.0926 (0.113) R2dN8 : 0.000815 R2N8 : -0.0513
σ : 0.854
deviance : 335.86
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C
peak time of C : 10.4
E
wheather : temperature
threshold : 24.99
memory length : 4317
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.73

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.1 0.86 9.27 -5.95 0.891 -3.55 0.453 7.77 -0.0948 10.3 24.99 4315 11 1.73
453.51 0.992 9.07 -3.85 0.896 -3.71 0.787 -- -0.138 9.85 24.6 4318 11.2 1.51
335.86 0.854 9.27 -5.93 0.896 -3.54 -- 7.75 -0.0926 10.4 24.99 4317 11 1.73
437.5 0.974 9.05 -4.11 0.915 -4.42 -- -- -0.271 9.81 24.64 4319 11.2 1.8
382.03 0.91 9.28 -5.91 -- -3.57 -- 7.85 -0.0748 -- 24.93 4294 11 1.72
943.61 1.44 8.64 -1.14 0.757 -- 0.634 -- 1.3 9.99 -- -- -- --
945.16 1.44 8.64 -1.12 0.753 -- -- -- 1.3 10.1 -- -- -- --
473.48 1.01 9.06 -4.09 -- -4.71 -- -- -0.232 -- 24.63 4196 11.2 1.68
698.78 1.23 8.88 -- 0.746 -3.13 -- -- 0.727 10.9 24.2 2841 11.7 1.33
979.42 1.46 8.66 -1.13 -- -- -- -- 1.3 -- -- -- -- --
977.95 1.46 8.62 -- 0.758 -- -- -- 1.43 10.2 -- -- -- --
709.11 1.24 8.73 -- -- -3.67 -- -- 0.891 -- 23.6 3610 13.1 2.32
1012.82 1.49 8.64 -- -- -- -- -- 1.43 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.00 radiation 1 43200 > th dose independent rect. 18 11
2 286.51 radiation 1 43200 < th dose independent rect. 18 11
3 292.50 radiation 1 43200 > th dose independent rect. 18 1
13 295.06 humidity 90 43200 < th dose independent rect. 9 1
15 295.22 radiation 1 43200 < th dose independent rect. 18 8
18 295.36 radiation 1 43200 < th dose independent rect. 18 2
24 296.83 humidity 90 43200 > th dose independent rect. 9 1
26 298.31 humidity 80 43200 > th dose dependent rect. 10 1
40 310.18 humidity 90 43200 > th dose independent rect. 5 7
41 310.50 humidity 90 43200 > th dose dependent rect. 5 7
46 312.29 radiation 1 14400 < th dose dependent rect. 18 14
63 314.94 radiation 1 14400 < th dose dependent rect. 18 21
64 315.03 radiation 1 14400 < th dose dependent rect. 18 19
77 317.17 humidity 90 43200 > th dose dependent rect. 7 4
102 317.60 atmosphere 1005 43200 > th dose dependent rect. 12 1
106 317.83 atmosphere 1005 43200 > th dose dependent rect. 9 5
107 317.85 atmosphere 1005 43200 > th dose dependent rect. 19 1
120 318.38 atmosphere 1005 43200 > th dose dependent rect. 4 16
123 318.44 atmosphere 1005 43200 > th dose dependent rect. 9 11
131 318.56 humidity 90 43200 < th dose independent rect. 5 16
133 318.57 atmosphere 1005 43200 > th dose dependent rect. 5 9
142 318.61 radiation 1 43200 < th dose dependent rect. 18 11
149 318.68 radiation 1 14400 < th dose dependent rect. 2 5
153 318.71 radiation 1 14400 < th dose dependent rect. 24 7
159 318.74 atmosphere 1005 43200 > th dose dependent sin 0 NA
162 318.76 radiation 1 14400 < th dose dependent rect. 22 9
196 318.87 atmosphere 1005 43200 > th dose independent rect. 16 1
197 318.87 humidity 90 43200 < th dose independent rect. 5 7
213 318.98 atmosphere 1005 43200 < th dose independent rect. 16 1
292 319.58 humidity 90 43200 < th dose independent rect. 5 18
336 319.87 atmosphere 1005 43200 > th dose dependent rect. 16 22
345 319.91 atmosphere 1005 43200 > th dose dependent rect. 8 23
347 319.92 atmosphere 1005 43200 > th dose dependent no NA NA
370 320.00 atmosphere 1005 43200 > th dose dependent rect. 12 23
382 320.05 radiation 1 14400 < th dose dependent sin 11 NA
429 320.23 atmosphere 1005 43200 > th dose dependent rect. 5 2
585 321.08 humidity 90 43200 < th dose independent rect. 8 13
638 321.60 radiation 1 43200 < th dose independent rect. 9 3
643 321.63 radiation 1 43200 > th dose independent rect. 9 3
682 322.06 radiation 30 14400 > th dose independent rect. 16 16
729 322.55 atmosphere 1010 43200 < th dose independent rect. 9 1
743 322.70 humidity 90 43200 > th dose independent rect. 5 18
746 322.72 radiation 1 43200 > th dose independent rect. 9 1
749 322.76 radiation 1 43200 < th dose independent rect. 9 1
776 323.17 radiation 1 43200 < th dose dependent rect. 9 4
786 323.39 atmosphere 1005 43200 > th dose dependent rect. 24 2
804 323.60 humidity 90 43200 > th dose independent rect. 5 16
821 324.01 humidity 90 43200 < th dose independent sin 22 NA
832 324.25 atmosphere 1010 43200 > th dose independent rect. 9 1
845 324.43 atmosphere 1010 43200 < th dose independent rect. 9 4
851 324.48 atmosphere 1010 43200 < th dose independent rect. 6 10
866 324.72 atmosphere 1010 43200 < th dose independent rect. 7 7
936 325.55 atmosphere 1010 43200 > th dose independent rect. 9 4
938 325.59 atmosphere 1010 43200 > th dose independent rect. 6 10
948 325.72 atmosphere 1010 43200 < th dose independent sin 1 NA