Os12g0121100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0121100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.01 | 0.448 | 9.86 | -0.912 | 1.03 | 0.933 | -0.877 | 2.18 | -0.186 | 13.5 | 31.2 | 334 | -- | -- |
| 94.95 | 0.454 | 9.82 | -0.564 | 1.01 | 0.968 | -1.11 | -- | -0.108 | 13.5 | 32.81 | 345 | -- | -- |
| 93.64 | 0.451 | 9.87 | -0.973 | 1.07 | 0.927 | -- | 2.57 | -0.208 | 13.3 | 31.4 | 265 | -- | -- |
| 100.12 | 0.466 | 9.82 | -0.578 | 1.02 | 0.966 | -- | -- | -0.11 | 13.3 | 32.9 | 324 | -- | -- |
| 139.4 | 0.55 | 9.85 | -0.675 | -- | 1.16 | -- | 0.894 | -0.133 | -- | 94.98 | 894 | -- | -- |
| 106.91 | 0.485 | 9.85 | -0.753 | 0.897 | -- | -1 | -- | -0.254 | 12.6 | -- | -- | -- | -- |
| 110.89 | 0.493 | 9.85 | -0.793 | 0.9 | -- | -- | -- | -0.26 | 12.3 | -- | -- | -- | -- |
| 140.05 | 0.551 | 9.83 | -0.501 | -- | 1.17 | -- | -- | -0.087 | -- | 98.07 | 910 | -- | -- |
| 108.1 | 0.484 | 9.8 | -- | 1.07 | 1.27 | -- | -- | -0.0191 | 13.6 | 37.57 | 326 | -- | -- |
| 161.86 | 0.594 | 9.87 | -0.823 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 127.45 | 0.528 | 9.83 | -- | 0.912 | -- | -- | -- | -0.172 | 12.3 | -- | -- | -- | -- |
| 142.48 | 0.556 | 9.79 | -- | -- | 1.43 | -- | -- | 0.089 | -- | 26.8 | 909 | -- | -- |
| 179.71 | 0.626 | 9.85 | -- | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 4 | 86.26 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 5 | 86.35 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 12 | 86.80 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 14 | 87.06 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 15 | 87.07 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 20 | 87.40 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 21 | 87.43 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 25 | 87.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 28 | 87.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 40 | 87.90 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 42 | 87.91 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 43 | 87.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 52 | 88.14 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 54 | 88.17 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 65 | 88.33 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 19 |
| 77 | 88.47 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 19 |
| 78 | 88.47 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 82 | 88.49 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 87 | 88.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 91 | 88.54 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 5 |
| 97 | 88.58 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 105 | 88.69 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 114 | 88.75 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 9 |
| 116 | 88.76 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 9 |
| 117 | 88.77 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 119 | 88.77 | temperature | 30.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 120 | 88.77 | humidity | 50.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 123 | 88.77 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 124 | 88.77 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 130 | 88.77 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 133 | 88.78 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 135 | 88.78 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 144 | 88.83 | radiation | 1.0 | 90 | < th | dose independent | sin | 3 | NA |
| 148 | 88.84 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 22 |
| 158 | 88.85 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 166 | 88.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 20 |
| 171 | 88.93 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 5 |
| 173 | 88.93 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 182 | 88.99 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 183 | 88.99 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 186 | 88.99 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 190 | 88.99 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 195 | 88.99 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 196 | 88.99 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 200 | 88.99 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 19 |
| 214 | 89.04 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 224 | 89.11 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 229 | 89.13 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 233 | 89.14 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 235 | 89.16 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 254 | 89.19 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 261 | 89.20 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 269 | 89.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 22 |
| 275 | 89.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 286 | 89.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 350 | 89.54 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 359 | 89.58 | temperature | 25.0 | 720 | < th | dose independent | sin | 5 | NA |
| 407 | 89.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 12 |
| 413 | 89.72 | radiation | 1.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 418 | 89.75 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 449 | 89.84 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 481 | 89.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 483 | 89.95 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 484 | 89.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 487 | 89.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 488 | 89.95 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 490 | 89.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 495 | 89.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 496 | 89.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 497 | 89.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 504 | 89.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 2 |
| 506 | 89.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 2 |
| 508 | 89.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 509 | 89.97 | temperature | 25.0 | 720 | < th | dose independent | rect. | 21 | 17 |
| 557 | 90.09 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 20 |
| 595 | 90.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 20 |
| 603 | 90.19 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 641 | 90.24 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 6 |
| 644 | 90.25 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 646 | 90.25 | wind | 9.0 | 30 | < th | dose independent | rect. | 6 | 19 |
| 690 | 90.34 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 710 | 90.38 | temperature | 30.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 714 | 90.39 | temperature | 25.0 | 720 | > th | dose independent | rect. | 24 | 13 |
| 726 | 90.41 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 19 |
| 753 | 90.46 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 758 | 90.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 14 |
| 759 | 90.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 775 | 90.50 | temperature | 25.0 | 720 | > th | dose independent | sin | 5 | NA |
| 777 | 90.50 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 798 | 90.53 | temperature | 10.0 | 720 | > th | dose dependent | sin | 4 | NA |
| 802 | 90.53 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 803 | 90.54 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 11 |
| 827 | 90.57 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 2 |
| 865 | 90.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 887 | 90.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 900 | 90.69 | wind | 9.0 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 929 | 90.75 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 934 | 90.76 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 957 | 90.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 961 | 90.81 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 965 | 90.82 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 976 | 90.85 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 13 |
| 993 | 90.89 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 3 |