Os12g0117900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0117900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.19 | 0.651 | 7.44 | -0.936 | 1.3 | 2.47 | 0.0365 | 1.63 | -0.318 | 20.9 | 16.9 | 585 | -- | -- |
| 194.84 | 0.65 | 7.45 | -1.09 | 1.31 | 2.55 | 0.0329 | -- | -0.356 | 21 | 17.2 | 556 | -- | -- |
| 191.98 | 0.645 | 7.43 | -0.894 | 1.3 | 2.49 | -- | 1.77 | -0.311 | 21 | 16.8 | 560 | -- | -- |
| 194.2 | 0.649 | 7.46 | -1.19 | 1.32 | 2.49 | -- | -- | -0.37 | 20.9 | 17.29 | 557 | -- | -- |
| 268.72 | 0.763 | 7.44 | -1.11 | -- | 3.44 | -- | 1.75 | -0.477 | -- | 17.1 | 627 | -- | -- |
| 286.14 | 0.793 | 7.4 | -0.583 | 2 | -- | 0.778 | -- | 0.019 | 20.3 | -- | -- | -- | -- |
| 288.03 | 0.795 | 7.4 | -0.607 | 2 | -- | -- | -- | 0.0192 | 20.3 | -- | -- | -- | -- |
| 269.34 | 0.764 | 7.47 | -1.46 | -- | 3.24 | -- | -- | -0.565 | -- | 18.74 | 619 | -- | -- |
| 230.91 | 0.708 | 7.44 | -- | 1.48 | 2.12 | -- | -- | -0.246 | 21 | 16.87 | 481 | -- | -- |
| 509.28 | 1.05 | 7.35 | -0.619 | -- | -- | -- | -- | -0.00193 | -- | -- | -- | -- | -- |
| 297.73 | 0.807 | 7.38 | -- | 2 | -- | -- | -- | 0.0868 | 20.3 | -- | -- | -- | -- |
| 318.66 | 0.831 | 7.42 | -- | -- | 2.7 | -- | -- | -0.328 | -- | 20.6 | 602 | -- | -- |
| 519.37 | 1.06 | 7.33 | -- | -- | -- | -- | -- | 0.0667 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 2 | 190.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 4 | 190.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 5 | 190.36 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 22 | 191.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 74 | 193.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 77 | 193.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 87 | 194.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 144 | 195.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 188 | 195.94 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 245 | 196.95 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 282 | 197.49 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 307 | 197.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 403 | 199.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 410 | 199.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 444 | 199.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 466 | 199.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 627 | 201.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 682 | 201.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 712 | 201.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 783 | 202.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 845 | 202.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |