FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0117700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.03 (0.0766) R2 : 0.686
β1 : 5.57 (0.302) R2dD : 0.29 R2D : 0.215
β2 : 2.7 (0.193) R2dC : 0.136 R2C : 0.0536
β3 : -2.22 (0.237) R2dE : 0.0671 R2E : -0.0545
β4 : 3.96 (0.832) R2dD*C : 0.0157 R2D*C : -0.0534
β5 : -6.56 (0.982) R2dD*E : 0.0367 R2D*E : 0.0713
γ1 : 2.9 (0.172) R2dN8 : 0.298 R2N8 : 0.0637
σ : 1.42
deviance : 919.33
__
_____
C
peak time of C : 19.9
E
wheather : radiation
threshold : 33.19
memory length : 1435
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.99
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
919.33 1.42 5.03 5.57 2.7 -2.22 3.96 -6.56 2.9 19.9 33.19 1435 6.99 --
994.65 1.47 5.05 6.4 2.71 -2.34 3.98 -- 3.19 20 30.27 1331 7.6 --
964.78 1.45 5.03 5.54 2.73 -2.24 -- -6.59 2.9 19.8 33.4 1446 6.93 --
1036.95 1.5 5.04 6.37 2.78 -2.37 -- -- 3.16 20.1 30 1325 7.67 --
1355.72 1.71 4.97 5.44 -- -2.43 -- -6.92 2.84 -- 38.49 1447 7.43 --
1183.99 1.61 5.13 6.37 2.72 -- 4.04 -- 2.58 19.5 -- -- -- --
1229.07 1.64 5.13 6.28 2.72 -- -- -- 2.59 19.5 -- -- -- --
1422.39 1.76 4.97 6.32 -- -2.58 -- -- 3.02 -- 40 1429 7.83 --
1786.95 1.97 5.01 -- 3 -3.87 -- -- 2.94 18.9 -0.07489 9052 6.95 --
1625.14 1.88 5.07 6.24 -- -- -- -- 2.54 -- -- -- -- --
2267.87 2.23 5.29 -- 2.67 -- -- -- 1.89 19.6 -- -- -- --
1838.34 2 4.98 -- -- -6.7 -- -- 2.78 -- -48.92 11226 7.26 --
2651.04 2.4 5.22 -- -- -- -- -- 1.85 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 867.00 humidity 70 14400 < th dose independent rect. 18 1
2 867.94 wind 3 43200 > th dose dependent rect. 5 2
3 870.66 humidity 70 14400 < th dose independent rect. 18 14
7 871.63 wind 3 43200 > th dose independent rect. 3 4
17 873.63 humidity 70 14400 > th dose independent rect. 18 1
19 874.14 wind 3 43200 < th dose independent rect. 3 3
33 875.53 wind 3 43200 < th dose independent rect. 4 1
34 875.75 humidity 70 14400 > th dose independent rect. 18 14
38 877.04 wind 3 43200 > th dose independent rect. 4 1
43 877.82 wind 1 43200 > th dose dependent rect. 3 4
46 878.02 humidity 70 14400 > th dose independent rect. 18 10
51 878.09 humidity 70 14400 > th dose independent rect. 18 3
53 878.22 humidity 70 14400 > th dose independent rect. 18 7
61 879.16 humidity 80 14400 < th dose dependent rect. 17 2
125 881.65 wind 9 43200 < th dose dependent rect. 3 4
142 884.08 humidity 50 14400 > th dose dependent rect. 18 1
166 885.35 humidity 70 14400 < th dose independent sin 13 NA
215 888.49 wind 5 43200 < th dose dependent rect. 2 8
244 889.67 humidity 60 14400 > th dose dependent rect. 14 5
258 889.89 humidity 80 14400 > th dose independent rect. 14 6
292 891.04 humidity 70 14400 > th dose independent sin 14 NA
364 893.07 humidity 60 14400 > th dose dependent rect. 13 10
414 894.05 wind 5 43200 < th dose independent rect. 6 1
455 894.94 humidity 60 14400 > th dose dependent rect. 14 1
463 895.11 humidity 80 14400 > th dose dependent rect. 18 5
481 895.56 humidity 80 14400 > th dose dependent rect. 21 1
611 897.81 humidity 60 14400 > th dose dependent sin 17 NA
865 902.16 temperature 30 14400 < th dose independent rect. 14 2
886 902.42 wind 5 43200 > th dose independent rect. 6 1
922 903.12 temperature 30 14400 > th dose independent rect. 14 2
948 903.66 humidity 90 14400 < th dose dependent sin 16 NA