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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0117600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BTB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0292) R2 : 0.46
β1 : 1.06 (0.116) R2dD : 0.116 R2D : 0.146
β2 : 0.637 (0.0741) R2dC : 0.0857 R2C : 0.0692
β3 : 1.45 (0.147) R2dE : 0.138 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.589 (0.063) R2dN8 : 0.127 R2N8 : -0.000197
σ : 0.545
deviance : 137.16
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_____
C
peak time of C : 3.87
E
wheather : precipitation
threshold : 0.4645
memory length : 2281
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.52 0.539 3.54 1.06 0.639 0.966 0.636 3.73 0.534 3.87 0.308 5283 -- --
136.85 0.545 3.56 1.06 0.725 1.41 0.584 -- 0.606 4 0.3836 2270 -- --
132.68 0.536 3.55 1.05 0.642 0.985 -- 3.74 0.533 3.78 0.315 5285 -- --
137.16 0.545 3.57 1.06 0.637 1.45 -- -- 0.589 3.87 0.4645 2281 -- --
155.32 0.58 3.54 1.06 -- 0.967 -- 3.96 0.547 -- 0.3218 5285 -- --
162.81 0.598 3.6 1.47 0.655 -- 0.848 -- 0.447 3.97 -- -- -- --
164.87 0.601 3.61 1.46 0.659 -- -- -- 0.442 3.85 -- -- -- --
158.85 0.587 3.57 1.05 -- 1.48 -- -- 0.574 -- 0.5 2264 -- --
160.8 0.591 3.6 -- 0.64 1.93 -- -- 0.468 3.99 0.3803 2260 -- --
188.74 0.642 3.61 1.49 -- -- -- -- 0.46 -- -- -- -- --
221.11 0.696 3.64 -- 0.688 -- -- -- 0.279 3.82 -- -- -- --
183.11 0.63 3.6 -- -- 1.98 -- -- 0.488 -- 0.2169 2260 -- --
247.16 0.734 3.65 -- -- -- -- -- 0.295 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.54 precipitation 0.1 4320 < th dose independent rect. 13 4
2 127.54 precipitation 0.1 4320 < th dose dependent rect. 13 4
3 127.55 precipitation 0.1 4320 > th dose independent rect. 13 4
5 127.98 precipitation 0.1 4320 > th dose dependent rect. 13 4
11 128.31 wind 3.0 14400 < th dose dependent rect. 24 5
16 128.59 precipitation 0.1 4320 > th dose dependent rect. 16 1
19 128.67 precipitation 0.1 4320 > th dose independent rect. 16 1
23 128.71 precipitation 0.1 4320 < th dose independent rect. 16 1
24 128.71 precipitation 0.1 4320 < th dose dependent rect. 16 1
56 130.41 wind 3.0 14400 < th dose independent rect. 24 1
60 130.46 wind 3.0 14400 < th dose dependent rect. 4 1
64 130.57 wind 1.0 14400 > th dose dependent rect. 24 1
70 130.66 precipitation 0.1 14400 > th dose independent rect. 16 4
82 130.73 precipitation 0.1 14400 < th dose independent rect. 16 4
84 130.73 precipitation 0.1 14400 < th dose dependent rect. 16 4
121 131.12 wind 5.0 14400 < th dose dependent rect. 24 1
134 131.21 wind 9.0 14400 < th dose dependent rect. 24 1
168 131.50 precipitation 0.1 14400 > th dose dependent rect. 13 7
175 131.56 precipitation 0.1 14400 > th dose dependent rect. 11 9
182 131.67 wind 3.0 14400 > th dose independent rect. 24 1
200 131.88 precipitation 0.1 14400 > th dose dependent rect. 16 4
216 132.05 wind 3.0 14400 < th dose independent rect. 24 4
228 132.16 humidity 80.0 14400 > th dose independent rect. 13 2
254 132.45 precipitation 0.1 14400 > th dose independent sin 21 NA
255 132.46 precipitation 0.1 14400 < th dose independent sin 21 NA
257 132.46 precipitation 0.1 14400 < th dose dependent sin 21 NA
277 132.59 precipitation 0.1 4320 > th dose dependent rect. 19 22
294 132.70 humidity 80.0 1440 < th dose independent rect. 6 15
308 132.75 humidity 80.0 1440 > th dose independent rect. 6 16
322 132.80 precipitation 0.1 4320 > th dose independent rect. 22 22
325 132.81 humidity 80.0 1440 < th dose independent sin 0 NA
332 132.83 precipitation 0.1 4320 < th dose independent rect. 22 22
335 132.83 precipitation 0.1 4320 < th dose dependent rect. 22 22
337 132.84 humidity 80.0 1440 < th dose independent rect. 11 2
338 132.85 precipitation 0.1 4320 > th dose independent sin 0 NA
353 132.90 precipitation 0.1 4320 < th dose independent sin 0 NA
354 132.90 precipitation 0.1 4320 < th dose dependent sin 0 NA
355 132.91 humidity 80.0 1440 > th dose independent sin 0 NA
379 133.09 humidity 80.0 1440 < th dose independent rect. 10 4
416 133.27 wind 3.0 14400 < th dose independent rect. 22 7
421 133.27 humidity 90.0 720 > th dose dependent rect. 7 15
429 133.32 humidity 80.0 14400 > th dose independent rect. 13 4
431 133.32 precipitation 0.1 4320 > th dose independent rect. 2 19
438 133.34 precipitation 0.1 4320 < th dose independent rect. 5 23
439 133.34 precipitation 0.1 14400 > th dose dependent sin 22 NA
440 133.34 precipitation 0.1 4320 < th dose dependent rect. 5 23
453 133.39 precipitation 0.1 4320 > th dose independent rect. 13 17
456 133.39 precipitation 0.1 4320 > th dose dependent rect. 22 19
457 133.40 precipitation 0.1 4320 < th dose independent rect. 13 17
458 133.40 precipitation 0.1 4320 > th dose independent rect. 13 21
462 133.40 precipitation 0.1 4320 < th dose dependent rect. 13 17
466 133.41 precipitation 0.1 4320 > th dose independent rect. 5 23
469 133.42 precipitation 0.1 4320 < th dose independent rect. 7 23
471 133.42 precipitation 0.1 4320 < th dose dependent rect. 7 23
483 133.44 precipitation 0.1 4320 < th dose independent rect. 13 21
484 133.44 precipitation 0.1 4320 < th dose dependent rect. 13 21
497 133.47 precipitation 0.1 4320 < th dose independent rect. 2 19
499 133.47 precipitation 0.1 4320 < th dose dependent rect. 2 19
512 133.49 precipitation 0.1 4320 > th dose independent rect. 7 23
557 133.56 humidity 70.0 1440 > th dose dependent rect. 7 14
573 133.58 precipitation 0.1 4320 > th dose independent rect. 15 23
575 133.58 precipitation 0.1 4320 < th dose independent rect. 15 23
578 133.58 precipitation 0.1 4320 < th dose dependent rect. 15 23
582 133.59 precipitation 0.1 4320 < th dose independent rect. 2 23
586 133.59 precipitation 0.1 4320 < th dose dependent rect. 2 23
594 133.60 precipitation 0.1 4320 < th dose independent rect. 18 23
598 133.60 precipitation 0.1 4320 < th dose dependent rect. 18 23
599 133.61 precipitation 0.1 4320 > th dose independent no NA NA
600 133.61 precipitation 0.1 4320 < th dose independent no NA NA
605 133.61 precipitation 0.1 4320 > th dose independent rect. 18 23
606 133.61 precipitation 0.1 4320 < th dose dependent no NA NA
652 133.68 humidity 80.0 14400 < th dose independent rect. 13 2
689 133.74 humidity 90.0 14400 > th dose independent rect. 19 2
697 133.77 humidity 80.0 1440 > th dose independent rect. 10 4
704 133.79 humidity 80.0 1440 < th dose independent rect. 6 9
708 133.80 precipitation 0.1 4320 < th dose independent rect. 13 15
710 133.80 precipitation 0.1 4320 < th dose dependent rect. 13 15
726 133.86 wind 3.0 14400 > th dose independent rect. 24 4
730 133.86 precipitation 0.1 4320 > th dose independent rect. 13 15
774 133.93 humidity 70.0 1440 > th dose dependent rect. 11 2
982 134.30 humidity 70.0 1440 > th dose dependent sin 0 NA