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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0117500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RPT2-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.014) R2 : 0.0014
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0236 (0.0295) R2dN8 : 0.0018 R2N8 : 0.0014
σ : 0.264
deviance : 32.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.44 0.259 2.96 0.513 0.106 0.257 0.0746 -2.03 0.113 6.85 29.5 1641 -- --
31.14 0.262 3.01 0.0547 0.127 -0.0293 0.0621 -- 0.0301 6.45 30.5 3322 -- --
30.45 0.257 2.96 0.502 0.108 0.245 -- -1.92 0.11 6.8 29.54 1590 -- --
31.08 0.26 3.01 0.0661 0.116 0.0439 -- -- 0.0173 5.81 33.4 1087 -- --
30.97 0.259 2.96 0.497 -- 0.247 -- -1.85 0.135 -- 29.2 1784 -- --
31.16 0.262 3.01 0.0575 0.122 -- 0.0541 -- 0.028 6.57 -- -- -- --
31.17 0.261 3.01 0.0583 0.123 -- -- -- 0.0279 6.54 -- -- -- --
31.86 0.263 3.02 0.0688 -- 0.0413 -- -- 0.0236 -- 33.2 1052 -- --
31.18 0.26 3.02 -- 0.124 0.0399 -- -- 0.0136 6.32 33.43 1070 -- --
31.95 0.264 3.02 0.0613 -- -- -- -- 0.0304 -- -- -- -- --
31.26 0.262 3.01 -- 0.123 -- -- -- 0.0214 6.51 -- -- -- --
31.99 0.263 3.02 -- -- 0.037 -- -- 0.0164 -- 33.4 1057 -- --
32.05 0.264 3.02 -- -- -- -- -- 0.0236 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.51 wind 1.0 30 < th dose independent rect. 2 1
2 25.51 wind 3.0 30 < th dose dependent rect. 2 1
4 25.55 temperature 15.0 30 > th dose dependent rect. 2 1
7 25.56 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 25.60 humidity 80.0 30 > th dose independent rect. 2 1
12 25.61 wind 9.0 30 < th dose independent rect. 2 1
13 25.61 temperature 10.0 30 > th dose independent rect. 2 1
15 25.61 temperature 30.0 30 < th dose independent rect. 2 1
16 25.61 humidity 50.0 30 > th dose independent rect. 2 1
19 25.61 atmosphere 995.0 30 > th dose independent rect. 2 1
20 25.61 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 25.61 radiation 1.0 30 < th dose independent rect. 2 1
27 25.61 precipitation 0.1 30 < th dose independent rect. 2 1
28 25.61 temperature 10.0 30 > th dose independent rect. 3 23
29 25.61 radiation 1.0 30 < th dose dependent rect. 2 1
34 25.61 precipitation 0.1 30 < th dose dependent rect. 2 1
39 25.62 humidity 50.0 30 > th dose dependent rect. 2 1
44 25.66 atmosphere 1005.0 30 > th dose independent rect. 2 1
46 25.68 atmosphere 1015.0 30 < th dose dependent rect. 2 1
49 25.85 wind 9.0 30 < th dose independent rect. 3 23
51 25.87 temperature 30.0 30 < th dose dependent rect. 2 1
63 26.32 wind 1.0 30 > th dose independent rect. 2 1
109 28.45 atmosphere 995.0 30 > th dose independent rect. 3 23
117 29.21 precipitation 0.1 1440 > th dose independent rect. 10 3
118 29.21 precipitation 0.1 1440 > th dose dependent rect. 10 3
119 29.28 precipitation 0.1 1440 > th dose independent rect. 12 1
121 29.28 precipitation 0.1 1440 > th dose dependent rect. 12 1
123 29.29 radiation 10.0 270 < th dose dependent rect. 11 1
124 29.30 precipitation 0.1 30 < th dose independent rect. 3 23
125 29.30 precipitation 0.1 30 < th dose dependent rect. 3 23
127 29.41 wind 1.0 1440 > th dose independent rect. 17 1
131 29.46 wind 1.0 1440 < th dose independent rect. 17 1
134 29.51 wind 1.0 1440 < th dose dependent rect. 17 1
156 29.82 radiation 40.0 720 < th dose independent rect. 15 8
160 29.87 temperature 10.0 720 > th dose independent rect. 15 8
161 29.87 temperature 10.0 720 > th dose independent rect. 23 16
167 29.89 wind 9.0 30 < th dose dependent rect. 3 23
170 29.90 wind 1.0 30 > th dose dependent rect. 2 1
173 29.91 humidity 90.0 90 < th dose independent rect. 2 1
174 29.92 wind 9.0 720 < th dose independent rect. 3 8
177 29.93 temperature 10.0 720 > th dose independent rect. 3 8
178 29.93 atmosphere 995.0 720 > th dose independent rect. 3 8
179 29.93 temperature 10.0 720 > th dose independent rect. 11 16
181 29.94 radiation 10.0 90 < th dose independent rect. 11 1
183 29.94 atmosphere 1015.0 720 < th dose independent rect. 3 8
184 29.94 atmosphere 995.0 720 > th dose independent rect. 23 16
192 29.97 wind 9.0 14400 < th dose dependent rect. 11 1
196 29.98 wind 1.0 14400 > th dose dependent rect. 11 1
198 29.99 wind 9.0 720 < th dose independent rect. 23 16
206 30.02 wind 7.0 1440 < th dose independent rect. 3 1
208 30.03 temperature 10.0 1440 > th dose independent rect. 3 1
211 30.03 temperature 30.0 1440 < th dose independent rect. 3 1
215 30.03 humidity 50.0 1440 > th dose independent rect. 3 1
224 30.03 atmosphere 995.0 1440 > th dose independent rect. 3 1
225 30.03 radiation 1.0 1440 < th dose independent rect. 3 1
245 30.03 temperature 10.0 1440 > th dose independent rect. 4 23
248 30.03 radiation 1.0 1440 < th dose dependent rect. 3 1
340 30.18 atmosphere 1015.0 1440 < th dose independent rect. 3 1
348 30.20 wind 9.0 720 < th dose independent rect. 15 8
357 30.21 atmosphere 1015.0 30 < th dose independent rect. 3 23
358 30.22 wind 3.0 14400 > th dose independent rect. 11 1
359 30.22 wind 3.0 10 < th dose independent rect. 12 1
363 30.22 wind 3.0 14400 > th dose independent rect. 10 3
381 30.26 temperature 30.0 14400 > th dose independent rect. 17 1
383 30.26 wind 3.0 14400 < th dose independent rect. 11 2
409 30.27 temperature 30.0 14400 > th dose dependent rect. 17 1
415 30.28 humidity 50.0 30 > th dose independent rect. 3 23
419 30.29 temperature 30.0 14400 < th dose independent rect. 17 1
437 30.29 temperature 30.0 14400 > th dose dependent rect. 15 3
474 30.30 temperature 30.0 14400 > th dose dependent rect. 15 1
513 30.31 humidity 80.0 90 < th dose independent rect. 23 5
534 30.32 temperature 30.0 14400 > th dose dependent sin 12 NA
543 30.32 wind 7.0 14400 > th dose dependent rect. 21 18
546 30.33 atmosphere 1000.0 10 > th dose independent rect. 14 12
549 30.33 wind 3.0 10 < th dose dependent rect. 12 1
608 30.34 wind 9.0 14400 > th dose independent rect. 18 22
620 30.34 wind 9.0 14400 > th dose dependent rect. 19 21
624 30.35 wind 7.0 14400 > th dose independent sin 4 NA
625 30.35 wind 7.0 14400 < th dose independent sin 4 NA
639 30.35 wind 7.0 14400 > th dose independent rect. 21 19
641 30.35 wind 9.0 14400 < th dose independent rect. 19 21
646 30.35 wind 7.0 14400 > th dose dependent sin 4 NA
682 30.36 wind 7.0 14400 > th dose independent rect. 22 17
686 30.36 wind 7.0 14400 < th dose independent rect. 22 18
687 30.36 wind 9.0 14400 > th dose independent rect. 19 19
702 30.36 humidity 80.0 90 < th dose dependent rect. 23 4
735 30.37 temperature 30.0 14400 > th dose independent sin 11 NA
736 30.37 temperature 30.0 14400 < th dose independent sin 11 NA
763 30.37 wind 7.0 14400 > th dose dependent rect. 7 7
807 30.38 wind 7.0 14400 > th dose independent rect. 6 8
816 30.38 wind 9.0 14400 > th dose independent rect. 10 15
817 30.38 wind 9.0 14400 < th dose independent rect. 11 15
832 30.38 wind 9.0 14400 < th dose independent rect. 9 17
855 30.38 wind 9.0 14400 < th dose independent rect. 7 20
864 30.38 wind 3.0 14400 > th dose dependent sin 2 NA
869 30.38 temperature 30.0 14400 > th dose dependent no NA NA
910 30.38 wind 9.0 14400 > th dose dependent rect. 9 15