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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0117200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Esterase/lipase/thioesterase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0484) R2 : 0.103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.11 (0.666) R2dE : 0.075 R2E : 0.0719
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.355 (0.102) R2dN8 : 0.0308 R2N8 : 0.0276
σ : 0.91
deviance : 381.57
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 83
memory length : 138
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.462
open length of G : 2.65

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
375.56 0.911 3.34 -0.552 0.0065 54.3 0.371 -215 -0.323 18.2 79.66 97 0.256 3.86
386.19 0.922 3.16 0.198 0.057 4.14 -0.657 -- -0.346 4.77 79.66 97 0.256 3.86
375.43 0.902 3.34 -0.548 0.0574 54 -- -213 -0.323 23.7 79.55 100 0.231 3.76
380.14 0.908 3.16 0.211 0.0262 4.1 -- -- -0.345 3.97 83 138 0.394 2.82
375.64 0.903 3.34 -0.546 -- 53.9 -- -213 -0.322 -- 79.55 100 0.229 3.76
410.49 0.95 3.16 0.247 0.134 -- -0.217 -- -0.359 2.92 -- -- -- --
410.59 0.949 3.16 0.252 0.134 -- -- -- -0.358 1.98 -- -- -- --
380.16 0.908 3.16 0.232 -- 4.07 -- -- -0.33 -- 83 138 0.417 2.74
381.36 0.91 3.17 -- 0.044 4.06 -- -- -0.361 0.851 83 138 0.442 2.68
411.67 0.948 3.16 0.258 -- -- -- -- -0.355 -- -- -- -- --
412.26 0.95 3.17 -- 0.139 -- -- -- -0.386 2.03 -- -- -- --
381.57 0.91 3.16 -- -- 4.11 -- -- -0.355 -- 83 138 0.462 2.65
413.42 0.949 3.17 -- -- -- -- -- -0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 376.65 humidity 80.0 90 < th dose dependent rect. 24 4
2 377.07 humidity 80.0 90 < th dose independent rect. 24 4
3 377.37 humidity 80.0 90 < th dose independent rect. 1 2
4 377.38 temperature 20.0 270 < th dose dependent rect. 24 1
13 379.91 radiation 40.0 10 > th dose dependent rect. 14 1
51 381.72 atmosphere 1000.0 10 < th dose independent rect. 13 1
63 383.33 wind 1.0 10 < th dose independent rect. 13 1
65 383.33 wind 1.0 10 < th dose dependent rect. 13 1
67 383.38 atmosphere 1000.0 90 < th dose dependent rect. 13 1
79 383.76 radiation 40.0 10 > th dose independent rect. 14 1
122 384.42 temperature 20.0 270 < th dose independent rect. 24 1
123 384.79 temperature 20.0 90 < th dose dependent rect. 24 4
125 385.76 humidity 80.0 10 < th dose dependent rect. 24 5
150 386.00 humidity 80.0 10 < th dose independent rect. 24 4
177 387.86 temperature 20.0 90 < th dose independent rect. 24 4
184 388.40 precipitation 0.1 10 > th dose independent rect. 19 1
194 388.40 precipitation 0.1 10 > th dose dependent rect. 19 1
283 391.69 temperature 20.0 30 < th dose dependent rect. 1 7
293 391.92 radiation 40.0 10 > th dose independent sin 13 NA
378 392.24 radiation 40.0 10 > th dose dependent sin 13 NA
382 392.29 temperature 25.0 30 > th dose dependent rect. 5 1
384 392.31 temperature 25.0 10 > th dose independent rect. 5 3
390 392.51 wind 7.0 30 > th dose dependent rect. 19 1
395 392.56 radiation 40.0 10 < th dose independent sin 13 NA
452 393.34 precipitation 0.1 30 > th dose independent rect. 4 16
462 393.55 wind 7.0 720 > th dose independent rect. 15 1
466 393.92 temperature 25.0 10 > th dose independent rect. 5 1
494 394.19 precipitation 0.1 30 > th dose dependent rect. 4 16
552 394.79 temperature 20.0 90 < th dose independent rect. 24 8
577 395.12 atmosphere 1000.0 90 < th dose dependent rect. 4 10
604 395.69 precipitation 0.1 10 > th dose independent rect. 19 7
608 395.69 precipitation 0.1 10 > th dose dependent rect. 19 7
642 396.24 wind 5.0 720 < th dose independent rect. 14 14
701 397.10 wind 3.0 720 > th dose dependent rect. 19 4
732 397.45 wind 5.0 720 > th dose independent rect. 19 3
763 397.56 wind 5.0 1440 > th dose independent rect. 14 10
768 397.61 wind 7.0 1440 < th dose independent rect. 15 1
772 397.62 precipitation 0.1 10 > th dose dependent sin 22 NA
777 397.65 precipitation 0.1 10 > th dose independent sin 22 NA
780 397.67 wind 5.0 1440 > th dose dependent rect. 14 12
781 397.68 precipitation 0.1 10 < th dose independent sin 22 NA
782 397.68 precipitation 0.1 10 < th dose dependent sin 22 NA
784 397.68 wind 5.0 1440 > th dose dependent rect. 14 15
785 397.68 wind 5.0 1440 > th dose dependent rect. 14 18
799 397.73 atmosphere 1005.0 90 < th dose independent rect. 5 3
803 397.77 atmosphere 1005.0 270 < th dose independent rect. 4 1
805 397.78 wind 9.0 720 < th dose dependent rect. 15 12
814 397.82 wind 5.0 1440 > th dose independent rect. 14 15
832 397.89 atmosphere 1000.0 10 < th dose dependent rect. 13 10
857 398.00 wind 3.0 720 > th dose independent rect. 18 8
861 398.01 wind 9.0 720 < th dose dependent rect. 16 10
870 398.03 radiation 40.0 10 < th dose independent rect. 11 14
893 398.12 wind 3.0 720 < th dose independent rect. 11 16
918 398.19 wind 5.0 1440 < th dose independent sin 16 NA
922 398.20 radiation 40.0 10 < th dose independent rect. 9 16
923 398.20 wind 5.0 720 > th dose dependent rect. 15 1
924 398.21 wind 5.0 1440 > th dose independent sin 16 NA
934 398.25 wind 3.0 90 < th dose dependent rect. 5 5
940 398.27 radiation 1.0 30 < th dose independent rect. 2 23
942 398.29 wind 7.0 30 > th dose independent rect. 19 1
968 398.35 temperature 25.0 10 > th dose independent rect. 12 20
974 398.37 radiation 1.0 30 < th dose independent rect. 19 23