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Os12g0116900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.56 (0.02) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.885 (0.0491) R2dC : 0.406 R2C : 0.391
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.213 (0.0422) R2dN8 : 0.0409 R2N8 : 0.0265
σ : 0.378
deviance : 65.32
__
_____
C
peak time of C : 14.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.46 0.359 8.65 -0.172 0.894 2.77 0.12 -8.21 0.282 14.2 0.1868 1514 -- --
63.67 0.374 8.55 0.196 0.895 0.632 0.175 -- 0.237 14.3 0.1868 1514 -- --
58.52 0.356 8.64 -0.172 0.896 2.77 -- -8.22 0.282 14.2 0.19 1513 -- --
60.92 0.364 8.54 0.103 0.891 0.463 -- -- 0.259 14.2 0.8091 1724 -- --
106.18 0.48 8.65 -0.198 -- 2.63 -- -7.68 0.259 -- 0.1863 1562 -- --
64.08 0.375 8.55 0.205 0.889 -- 0.148 -- 0.235 14.3 -- -- -- --
64.16 0.375 8.55 0.209 0.889 -- -- -- 0.236 14.3 -- -- -- --
108.21 0.484 8.55 0.0744 -- 0.476 -- -- 0.231 -- 0.5602 1619 -- --
61.19 0.364 8.55 -- 0.898 0.495 -- -- 0.246 14.2 0.8336 1724 -- --
111.19 0.493 8.56 0.172 -- -- -- -- 0.214 -- -- -- -- --
65.32 0.378 8.56 -- 0.885 -- -- -- 0.213 14.3 -- -- -- --
108.34 0.485 8.55 -- -- 0.521 -- -- 0.227 -- 0.4806 1619 -- --
111.96 0.494 8.56 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.30 radiation 1.0 270 < th dose dependent rect. 20 17
5 53.49 temperature 15.0 270 > th dose independent rect. 5 15
8 53.79 radiation 1.0 270 < th dose independent rect. 20 17
18 54.85 humidity 50.0 270 > th dose independent rect. 16 17
19 54.85 temperature 15.0 10 > th dose dependent rect. 2 10
26 55.01 temperature 15.0 30 > th dose dependent rect. 5 7
28 55.03 radiation 1.0 90 > th dose independent rect. 11 8
36 55.03 precipitation 0.1 270 < th dose independent rect. 5 15
40 55.03 precipitation 0.1 270 < th dose dependent rect. 5 15
43 55.07 temperature 15.0 270 > th dose independent rect. 16 18
44 55.15 radiation 1.0 270 < th dose dependent rect. 20 10
46 55.17 radiation 1.0 270 < th dose independent rect. 20 10
49 55.20 humidity 50.0 270 > th dose independent rect. 15 19
51 55.23 humidity 50.0 270 > th dose dependent rect. 20 9
56 55.28 precipitation 0.1 270 < th dose independent rect. 16 17
57 55.28 precipitation 0.1 270 < th dose dependent rect. 16 17
62 55.30 temperature 15.0 90 > th dose independent rect. 18 17
70 55.41 atmosphere 995.0 270 > th dose dependent rect. 10 5
79 55.55 radiation 40.0 270 < th dose independent rect. 16 17
80 55.56 temperature 10.0 270 > th dose independent rect. 20 9
81 55.56 temperature 30.0 270 < th dose independent rect. 20 9
82 55.56 humidity 50.0 270 > th dose independent rect. 20 9
85 55.56 atmosphere 995.0 270 > th dose independent rect. 20 9
92 55.56 atmosphere 1015.0 270 < th dose independent rect. 5 15
97 55.57 temperature 10.0 270 > th dose independent rect. 9 7
98 55.57 atmosphere 1015.0 270 < th dose independent rect. 9 7
106 55.62 wind 9.0 270 < th dose independent rect. 20 9
115 55.67 wind 9.0 270 < th dose independent rect. 16 17
116 55.68 precipitation 0.1 270 < th dose independent rect. 9 7
118 55.68 precipitation 0.1 270 < th dose dependent rect. 9 7
124 55.73 wind 9.0 270 < th dose independent rect. 5 15
128 55.76 wind 9.0 270 < th dose independent rect. 9 7
130 55.77 temperature 10.0 270 > th dose dependent rect. 3 7
133 55.80 precipitation 0.1 270 < th dose independent rect. 20 9
134 55.80 atmosphere 995.0 270 > th dose dependent rect. 11 2
135 55.80 precipitation 0.1 270 < th dose dependent rect. 20 9
138 55.86 atmosphere 995.0 270 > th dose independent rect. 9 7
185 56.08 humidity 50.0 270 > th dose independent rect. 10 5
190 56.12 temperature 20.0 30 > th dose independent rect. 6 6
191 56.12 atmosphere 1005.0 10 > th dose dependent rect. 12 5
197 56.15 atmosphere 1005.0 270 > th dose independent rect. 12 1
206 56.19 precipitation 0.1 90 < th dose independent rect. 18 17
210 56.19 precipitation 0.1 90 < th dose dependent rect. 18 17
212 56.22 humidity 90.0 30 < th dose independent rect. 2 10
218 56.24 wind 7.0 90 < th dose independent rect. 18 17
220 56.26 humidity 50.0 270 > th dose independent rect. 5 15
222 56.26 humidity 70.0 30 > th dose dependent rect. 21 17
243 56.35 radiation 40.0 270 < th dose dependent rect. 14 7
245 56.37 humidity 90.0 270 < th dose independent rect. 10 6
260 56.41 temperature 30.0 270 < th dose independent rect. 16 17
262 56.42 temperature 15.0 270 > th dose dependent rect. 5 4
269 56.44 atmosphere 995.0 90 > th dose independent rect. 18 17
285 56.51 humidity 50.0 270 > th dose independent rect. 15 6
294 56.54 humidity 60.0 270 > th dose independent rect. 12 1
300 56.57 atmosphere 1005.0 10 > th dose independent rect. 12 5
317 56.64 wind 1.0 270 > th dose independent rect. 9 7
338 56.68 atmosphere 995.0 270 > th dose independent rect. 16 17
342 56.69 humidity 90.0 10 < th dose independent rect. 6 6
368 56.72 radiation 30.0 270 < th dose independent rect. 15 6
372 56.73 wind 1.0 270 > th dose independent rect. 10 5
394 56.78 precipitation 0.1 270 < th dose independent rect. 13 22
397 56.78 precipitation 0.1 270 < th dose dependent rect. 13 22
398 56.79 temperature 15.0 270 > th dose independent rect. 15 6
411 56.82 temperature 20.0 270 > th dose independent rect. 5 5
412 56.82 humidity 50.0 270 > th dose dependent rect. 11 2
419 56.84 humidity 60.0 10 > th dose independent rect. 12 5
423 56.84 humidity 60.0 10 > th dose dependent rect. 21 11
424 56.84 radiation 40.0 270 < th dose dependent rect. 15 18
426 56.85 atmosphere 1015.0 270 < th dose independent rect. 20 9
476 56.97 humidity 50.0 270 > th dose independent rect. 16 4
499 57.01 radiation 1.0 30 > th dose dependent rect. 12 7
510 57.02 precipitation 0.1 270 < th dose independent rect. 15 6
513 57.02 precipitation 0.1 270 < th dose dependent rect. 15 6
520 57.04 temperature 15.0 270 > th dose independent rect. 2 9
522 57.04 radiation 1.0 270 > th dose independent rect. 17 16
531 57.05 radiation 1.0 270 < th dose dependent sin 10 NA
557 57.08 temperature 10.0 270 > th dose independent rect. 21 18
563 57.09 atmosphere 1015.0 270 < th dose independent rect. 21 18
567 57.10 humidity 50.0 270 > th dose independent rect. 21 18
576 57.13 wind 1.0 270 > th dose independent rect. 15 6
578 57.13 atmosphere 995.0 270 > th dose independent rect. 5 15
593 57.15 atmosphere 995.0 270 > th dose independent rect. 21 18
599 57.16 radiation 1.0 90 < th dose independent rect. 16 5
615 57.18 radiation 1.0 43200 < th dose dependent rect. 19 3
623 57.19 radiation 1.0 30 < th dose dependent rect. 16 5
628 57.20 radiation 1.0 270 > th dose independent rect. 4 5
629 57.20 wind 9.0 270 < th dose independent rect. 15 6
670 57.25 wind 7.0 10 < th dose independent rect. 18 18
674 57.27 temperature 10.0 270 > th dose independent rect. 11 2
675 57.27 atmosphere 995.0 270 > th dose independent rect. 11 2
676 57.27 atmosphere 1015.0 270 < th dose independent rect. 11 2
677 57.27 precipitation 0.1 270 < th dose independent rect. 11 2
682 57.27 precipitation 0.1 270 < th dose dependent rect. 11 2
687 57.28 temperature 30.0 90 < th dose independent rect. 17 4
702 57.30 temperature 10.0 270 > th dose dependent rect. 20 9
707 57.32 humidity 50.0 90 > th dose dependent rect. 23 16
712 57.33 wind 9.0 270 < th dose independent rect. 21 18
713 57.33 humidity 90.0 30 < th dose independent rect. 17 19
716 57.34 humidity 90.0 270 < th dose independent rect. 11 4
718 57.34 precipitation 0.1 270 < th dose independent rect. 3 7
723 57.34 precipitation 0.1 270 < th dose dependent rect. 3 7
728 57.35 humidity 50.0 90 > th dose dependent rect. 17 4
740 57.37 wind 1.0 270 > th dose independent rect. 11 2
762 57.38 wind 7.0 10 < th dose independent rect. 6 6
773 57.39 atmosphere 1015.0 270 < th dose independent rect. 15 6
796 57.42 radiation 1.0 270 < th dose independent sin 10 NA
817 57.44 temperature 30.0 270 < th dose independent rect. 11 2
827 57.45 radiation 1.0 270 > th dose independent sin 10 NA
832 57.45 humidity 70.0 30 > th dose dependent rect. 23 15
839 57.46 precipitation 0.1 270 < th dose independent rect. 21 18
845 57.46 precipitation 0.1 270 < th dose dependent rect. 21 18
847 57.47 radiation 1.0 270 > th dose independent rect. 11 2
860 57.48 temperature 15.0 1440 > th dose independent rect. 11 8
872 57.50 wind 9.0 270 < th dose independent rect. 11 2
885 57.51 wind 9.0 270 < th dose independent rect. 13 22
926 57.55 humidity 60.0 10 > th dose dependent rect. 17 4
940 57.57 wind 7.0 10 < th dose independent rect. 16 20
962 57.59 temperature 10.0 10 > th dose dependent rect. 19 17
965 57.60 wind 1.0 270 > th dose independent rect. 5 15
970 57.60 wind 9.0 270 < th dose dependent rect. 5 4
974 57.61 temperature 10.0 1440 > th dose independent rect. 13 6
979 57.61 temperature 10.0 1440 > th dose independent rect. 19 18
982 57.61 atmosphere 995.0 1440 > th dose independent rect. 19 18
987 57.62 humidity 70.0 10 > th dose independent rect. 18 3
990 57.62 humidity 50.0 10 > th dose independent rect. 17 19