Os12g0116300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0116300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.24 | 0.359 | 3.09 | -0.0567 | 0.164 | -0.254 | -0.131 | 0.339 | -0.0664 | 9.39 | 90 | 931 | -- | -- |
| 58.43 | 0.356 | 3.09 | -0.0283 | 0.169 | -0.256 | -0.0128 | -- | -0.063 | 9.36 | 90.27 | 932 | -- | -- |
| 58.29 | 0.356 | 3.09 | -0.0537 | 0.156 | -0.263 | -- | 0.279 | -0.0659 | 9.48 | 90.13 | 984 | -- | -- |
| 58.43 | 0.356 | 3.09 | -0.0288 | 0.17 | -0.256 | -- | -- | -0.0632 | 9.35 | 90.27 | 929 | -- | -- |
| 59.04 | 0.358 | 3.09 | -0.0804 | -- | -0.227 | -- | 0.478 | -0.0532 | -- | 89.24 | 1388 | -- | -- |
| 59.52 | 0.362 | 3.09 | -0.0613 | 0.101 | -- | -0.0622 | -- | -0.0226 | 8.5 | -- | -- | -- | -- |
| 59.53 | 0.361 | 3.09 | -0.0633 | 0.102 | -- | -- | -- | -0.0226 | 8.46 | -- | -- | -- | -- |
| 59.37 | 0.359 | 3.1 | -0.0332 | -- | -0.216 | -- | -- | -0.0477 | -- | 89.19 | 1388 | -- | -- |
| 58.45 | 0.356 | 3.09 | -- | 0.171 | -0.262 | -- | -- | -0.0611 | 9.38 | 90.4 | 929 | -- | -- |
| 60.1 | 0.362 | 3.09 | -0.0628 | -- | -- | -- | -- | -0.0216 | -- | -- | -- | -- | -- |
| 59.63 | 0.361 | 3.09 | -- | 0.101 | -- | -- | -- | -0.0155 | 8.5 | -- | -- | -- | -- |
| 59.36 | 0.359 | 3.1 | -- | -- | -0.221 | -- | -- | -0.0578 | -- | 90.45 | 1398 | -- | -- |
| 60.21 | 0.362 | 3.09 | -- | -- | -- | -- | -- | -0.0146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.08 | radiation | 10 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 3 | 43.73 | radiation | 10 | 30 | < th | dose independent | rect. | 11 | 2 |
| 11 | 48.17 | wind | 1 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 12 | 48.87 | wind | 1 | 90 | < th | dose dependent | rect. | 9 | 3 |
| 34 | 52.57 | wind | 1 | 90 | < th | dose independent | rect. | 11 | 1 |
| 76 | 53.56 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 77 | 53.58 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 1 |
| 117 | 54.57 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 3 |
| 126 | 54.69 | wind | 1 | 90 | < th | dose independent | rect. | 9 | 3 |
| 177 | 55.30 | humidity | 80 | 10 | > th | dose independent | rect. | 14 | 1 |
| 180 | 55.30 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 351 | 56.74 | radiation | 10 | 10 | < th | dose independent | rect. | 20 | 18 |
| 353 | 56.76 | wind | 1 | 90 | < th | dose dependent | sin | 21 | NA |
| 382 | 56.89 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 1 |
| 464 | 57.21 | radiation | 20 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 480 | 57.26 | radiation | 10 | 90 | < th | dose independent | rect. | 19 | 19 |
| 482 | 57.27 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 1 |
| 502 | 57.31 | humidity | 70 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 518 | 57.35 | humidity | 60 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 551 | 57.41 | humidity | 60 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 573 | 57.45 | radiation | 20 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 574 | 57.45 | radiation | 20 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 625 | 57.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 675 | 57.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 6 |
| 680 | 57.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 688 | 57.67 | wind | 5 | 10 | > th | dose independent | rect. | 13 | 1 |
| 695 | 57.68 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 18 |
| 703 | 57.70 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 15 |
| 718 | 57.72 | radiation | 10 | 10 | < th | dose independent | rect. | 1 | 13 |
| 728 | 57.73 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 14 |
| 736 | 57.74 | humidity | 50 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 756 | 57.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 6 |
| 761 | 57.78 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 765 | 57.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 4 |
| 806 | 57.81 | radiation | 1 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 811 | 57.82 | humidity | 70 | 720 | > th | dose independent | rect. | 23 | 10 |
| 812 | 57.82 | humidity | 60 | 10 | < th | dose independent | rect. | 16 | 18 |
| 823 | 57.83 | radiation | 20 | 10 | > th | dose independent | rect. | 10 | 2 |
| 829 | 57.83 | wind | 1 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 834 | 57.85 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 851 | 57.85 | humidity | 60 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 852 | 57.85 | wind | 9 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 883 | 57.87 | humidity | 60 | 90 | < th | dose independent | rect. | 9 | 1 |
| 911 | 57.88 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 2 |
| 916 | 57.89 | wind | 9 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 919 | 57.89 | humidity | 80 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 953 | 57.90 | radiation | 20 | 90 | < th | dose independent | rect. | 24 | 14 |
| 959 | 57.90 | humidity | 60 | 4320 | < th | dose dependent | rect. | 8 | 1 |