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Os12g0116200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.26 (0.0178) R2 : 0.444
β1 : -1.23 (0.0653) R2dD : 0.449 R2D : 0.444
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0199 (0.038) R2dN8 : 0.000448 R2N8 : -0.0044
σ : 0.334
deviance : 51.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42 0.305 8.32 -1.67 0.175 -0.382 -0.661 6.64 -0.0538 9.55 30.4 240 -- --
43.37 0.307 8.26 -1.15 0.145 0.354 -0.692 -- -0.0406 9.7 29.6 273 -- --
43.54 0.307 8.32 -1.73 0.181 -0.454 -- 7.16 -0.0513 9.75 30.4 226 -- --
44.77 0.312 8.26 -1.17 0.178 0.358 -- -- -0.0334 10.8 29.7 276 -- --
45.45 0.314 8.33 -1.74 -- -0.432 -- 7.35 -0.0532 -- 30.47 245 -- --
47.2 0.322 8.25 -1.21 0.224 -- -0.556 -- -0.0209 9.03 -- -- -- --
48.16 0.325 8.25 -1.23 0.235 -- -- -- -0.0225 8.31 -- -- -- --
46.62 0.318 8.26 -1.18 -- 0.378 -- -- -0.0255 -- 29.63 310 -- --
79.65 0.416 8.23 -- 0.213 0.468 -- -- 0.0742 9.47 29.9 1772 -- --
51.21 0.334 8.26 -1.23 -- -- -- -- -0.0199 -- -- -- -- --
88.07 0.439 8.22 -- 0.23 -- -- -- 0.115 8.7 -- -- -- --
80.36 0.418 8.22 -- -- 0.546 -- -- 0.162 -- 27.57 4881 -- --
91.06 0.445 8.23 -- -- -- -- -- 0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.53 humidity 70 270 > th dose independent rect. 14 9
3 41.59 humidity 70 270 < th dose independent rect. 12 8
14 41.62 humidity 70 270 < th dose independent rect. 12 5
40 41.99 humidity 70 270 > th dose independent sin 18 NA
44 42.04 temperature 30 270 < th dose independent rect. 22 23
76 42.27 humidity 70 270 < th dose independent sin 18 NA
93 42.31 temperature 30 270 > th dose independent rect. 18 23
108 42.35 radiation 10 270 < th dose independent rect. 14 11
110 42.37 humidity 80 270 < th dose dependent rect. 12 5
124 42.39 temperature 30 270 > th dose independent rect. 10 7
126 42.39 temperature 30 270 < th dose independent rect. 13 23
127 42.40 temperature 30 270 > th dose independent rect. 14 23
135 42.46 temperature 30 270 > th dose independent sin 23 NA
141 42.48 temperature 30 270 > th dose independent rect. 9 10
155 42.48 temperature 30 270 < th dose independent rect. 4 21
160 42.49 temperature 30 270 < th dose independent no NA NA
202 42.53 humidity 90 90 < th dose dependent rect. 12 8
203 42.54 temperature 30 270 > th dose independent no NA NA
298 42.55 radiation 10 270 < th dose independent sin 17 NA
362 42.67 humidity 70 270 > th dose independent rect. 4 21
381 42.68 radiation 40 270 < th dose dependent rect. 14 11
387 42.70 humidity 70 720 < th dose independent rect. 12 1
409 42.76 temperature 30 270 < th dose independent rect. 5 18
428 42.78 radiation 10 270 > th dose dependent rect. 12 20
464 42.83 humidity 70 270 > th dose independent rect. 12 22
467 42.83 radiation 40 270 < th dose dependent sin 17 NA
470 42.83 temperature 30 270 > th dose dependent rect. 15 23
476 42.85 radiation 20 14400 > th dose independent rect. 16 16
478 42.85 radiation 40 4320 < th dose independent rect. 13 23
483 42.86 radiation 10 270 < th dose independent rect. 5 20
484 42.86 radiation 40 4320 < th dose independent rect. 13 21
493 42.89 radiation 10 14400 > th dose independent rect. 17 14
498 42.89 humidity 50 270 > th dose dependent rect. 14 9
504 42.90 radiation 40 4320 < th dose independent rect. 11 23
506 42.90 radiation 1 270 > th dose dependent rect. 12 7
520 42.91 radiation 40 4320 < th dose independent rect. 7 7
521 42.91 humidity 50 270 > th dose independent rect. 14 11
522 42.91 radiation 40 4320 < th dose independent rect. 22 16
549 42.92 radiation 40 4320 > th dose independent rect. 13 21
553 42.92 radiation 40 4320 < th dose independent rect. 9 23
572 42.93 radiation 40 4320 < th dose independent rect. 9 6
622 42.95 radiation 40 4320 < th dose independent no NA NA
700 42.95 radiation 40 4320 < th dose independent rect. 1 21
748 42.96 radiation 40 4320 < th dose independent sin 23 NA
752 42.96 radiation 40 4320 < th dose independent rect. 13 1
754 42.96 temperature 30 270 < th dose independent rect. 14 9
823 42.98 radiation 1 270 > th dose dependent sin 16 NA
829 42.98 temperature 30 90 > th dose dependent rect. 18 23
834 42.99 temperature 30 720 < th dose independent rect. 21 15
835 42.99 radiation 10 270 < th dose independent rect. 9 16
841 42.99 radiation 20 270 < th dose dependent rect. 5 20
845 43.00 humidity 70 270 < th dose dependent rect. 13 1
852 43.01 temperature 30 270 > th dose dependent sin 2 NA
860 43.03 temperature 30 720 > th dose independent sin 6 NA
874 43.04 temperature 30 270 < th dose independent rect. 4 15
891 43.06 radiation 20 14400 > th dose independent rect. 7 1
892 43.06 radiation 40 4320 < th dose independent rect. 11 3
896 43.06 radiation 20 270 > th dose independent rect. 12 20
899 43.06 radiation 40 4320 > th dose independent rect. 11 23
940 43.08 temperature 30 270 < th dose independent rect. 5 9
951 43.08 radiation 30 4320 > th dose dependent rect. 13 21
954 43.09 temperature 30 720 < th dose independent sin 8 NA
963 43.09 temperature 30 90 > th dose dependent rect. 9 8
981 43.10 radiation 40 4320 < th dose independent sin 12 NA
982 43.10 radiation 20 43200 > th dose independent rect. 11 1