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Os12g0115900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Elongation factor P/YeiP family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.033) R2 : 0.753
β1 : -1.25 (0.12) R2dD : 0.0612 R2D : -0.0683
β2 : 2.61 (0.0841) R2dC : 0.535 R2C : 0.447
β3 : 1.27 (0.148) R2dE : 0.0446 R2E : -0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.92 (0.545) R2dD*E : 0.0307 R2D*E : -0.0758
γ1 : -1.27 (0.0702) R2dN8 : 0.24 R2N8 : 0.134
σ : 0.614
deviance : 173.63
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C
peak time of C : 20.1
E
wheather : radiation
threshold : 30
memory length : 162
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.76 0.619 10.5 -1.25 2.61 1.3 0.119 4.05 -1.28 20.1 30.01 156 -- --
192.66 0.646 10.5 -1.22 2.65 1.09 0.0605 -- -1.28 20 24.64 169 -- --
173.63 0.614 10.5 -1.25 2.61 1.27 -- 3.92 -1.27 20.1 30 162 -- --
189.69 0.641 10.5 -1.27 2.63 0.883 -- -- -1.24 20.1 13.15 182 -- --
316.02 0.828 10.4 -1.17 -- 2.73 -- 3.85 -1.47 -- -0.001229 857 -- --
203.04 0.668 10.5 -1.26 2.58 -- -0.356 -- -1.22 19.6 -- -- -- --
203.39 0.668 10.5 -1.25 2.58 -- -- -- -1.22 19.6 -- -- -- --
291.42 0.795 10.5 -1.47 -- 2.72 -- -- -1.56 -- -93.39 860 -- --
231.09 0.708 10.4 -- 2.6 0.895 -- -- -1.12 20 24.33 169 -- --
560.02 1.11 10.4 -1.28 -- -- -- -- -1.26 -- -- -- -- --
244.45 0.731 10.4 -- 2.59 -- -- -- -1.08 19.6 -- -- -- --
348.25 0.869 10.4 -- -- 2.64 -- -- -1.39 -- -78.71 851 -- --
603.55 1.15 10.4 -- -- -- -- -- -1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.10 temperature 20.0 90 > th dose independent rect. 5 17
4 167.18 temperature 20.0 90 > th dose independent rect. 4 20
5 167.64 temperature 20.0 270 > th dose independent rect. 3 18
9 168.13 temperature 10.0 43200 > th dose independent rect. 9 9
10 168.28 temperature 20.0 270 > th dose independent rect. 4 3
11 168.34 humidity 50.0 14400 > th dose independent rect. 7 2
14 168.91 wind 9.0 14400 < th dose independent rect. 5 4
18 169.17 temperature 20.0 90 > th dose dependent rect. 5 3
20 169.32 temperature 30.0 90 < th dose dependent sin 4 NA
26 169.90 temperature 30.0 270 < th dose dependent sin 6 NA
30 170.14 temperature 15.0 4320 > th dose independent rect. 7 3
34 170.23 radiation 30.0 270 > th dose dependent sin 9 NA
37 170.44 atmosphere 1000.0 10 > th dose independent rect. 6 16
38 170.46 humidity 80.0 43200 < th dose dependent rect. 5 3
40 170.58 temperature 10.0 90 > th dose dependent sin 5 NA
45 170.79 precipitation 0.1 14400 > th dose independent rect. 9 1
47 170.79 precipitation 0.1 14400 > th dose dependent rect. 9 1
52 170.93 humidity 80.0 43200 > th dose independent rect. 6 1
58 171.09 precipitation 0.1 14400 < th dose independent rect. 9 1
59 171.09 precipitation 0.1 14400 < th dose dependent rect. 9 1
60 171.17 humidity 80.0 43200 < th dose independent rect. 6 1
63 171.22 precipitation 0.1 14400 > th dose independent rect. 7 3
66 171.22 humidity 90.0 14400 > th dose dependent rect. 9 2
67 171.22 precipitation 0.1 14400 > th dose dependent rect. 7 3
69 171.36 radiation 30.0 270 > th dose dependent rect. 9 2
70 171.42 radiation 30.0 270 > th dose dependent rect. 7 5
94 171.59 temperature 15.0 270 > th dose dependent rect. 23 14
161 172.29 humidity 90.0 14400 > th dose dependent rect. 8 5
162 172.30 wind 9.0 14400 < th dose independent rect. 20 1
179 172.50 temperature 15.0 90 > th dose independent rect. 7 23
184 172.60 radiation 40.0 270 > th dose independent sin 9 NA
186 172.64 radiation 30.0 270 < th dose dependent rect. 3 8
198 172.87 temperature 30.0 270 < th dose dependent rect. 23 14
199 172.91 temperature 20.0 90 < th dose independent sin 5 NA
200 172.91 temperature 20.0 14400 < th dose independent rect. 19 2
202 172.94 radiation 40.0 90 < th dose independent rect. 3 23
216 173.03 precipitation 0.1 14400 < th dose independent rect. 7 3
217 173.03 precipitation 0.1 14400 < th dose dependent rect. 7 3
218 173.07 temperature 20.0 90 > th dose dependent rect. 8 7
219 173.11 temperature 20.0 90 > th dose independent sin 5 NA
235 173.24 wind 7.0 14400 > th dose dependent rect. 19 1
236 173.26 radiation 30.0 90 < th dose independent rect. 5 6
244 173.29 temperature 20.0 270 > th dose dependent rect. 8 5
280 173.52 wind 3.0 43200 > th dose independent rect. 6 2
310 173.63 radiation 40.0 270 > th dose independent rect. 9 2
312 173.64 wind 3.0 43200 < th dose independent rect. 6 2
351 173.83 temperature 20.0 14400 > th dose independent rect. 18 3
366 173.89 wind 5.0 14400 > th dose dependent rect. 7 2
400 173.99 radiation 1.0 90 < th dose dependent sin 9 NA
410 174.06 temperature 25.0 10 > th dose independent rect. 6 3
431 174.20 humidity 90.0 14400 > th dose independent rect. 9 1
433 174.22 temperature 20.0 90 < th dose independent rect. 23 16
468 174.30 radiation 10.0 4320 > th dose dependent rect. 5 2
492 174.34 temperature 20.0 90 < th dose independent rect. 23 14
493 174.34 radiation 40.0 270 < th dose independent rect. 9 23
503 174.40 wind 7.0 90 < th dose independent rect. 7 23
527 174.45 radiation 10.0 270 < th dose independent rect. 4 3
544 174.50 precipitation 0.1 14400 > th dose independent rect. 6 8
567 174.59 wind 9.0 14400 > th dose independent rect. 20 1
587 174.66 wind 3.0 10 < th dose independent rect. 6 3
612 174.76 radiation 40.0 270 < th dose independent sin 6 NA
631 174.85 radiation 40.0 270 < th dose independent rect. 1 23
633 174.85 temperature 25.0 270 > th dose dependent rect. 9 2
636 174.87 precipitation 0.1 14400 < th dose independent rect. 6 8
637 174.87 precipitation 0.1 14400 < th dose dependent rect. 6 8
646 174.90 radiation 1.0 14400 < th dose dependent rect. 7 2
651 174.92 temperature 20.0 10 > th dose dependent rect. 9 8
653 174.93 wind 5.0 43200 < th dose dependent rect. 6 2
659 174.95 wind 5.0 43200 < th dose dependent rect. 4 4
676 174.98 wind 1.0 43200 < th dose independent rect. 6 19
677 174.99 temperature 20.0 14400 > th dose independent sin 17 NA
686 175.01 wind 1.0 43200 > th dose dependent rect. 5 3
690 175.02 wind 1.0 43200 > th dose dependent rect. 7 1
704 175.04 wind 3.0 43200 < th dose dependent rect. 15 9
717 175.07 radiation 20.0 4320 < th dose independent rect. 1 6
720 175.07 temperature 25.0 270 > th dose dependent rect. 23 14
729 175.09 temperature 20.0 90 > th dose dependent rect. 8 9
730 175.10 temperature 20.0 14400 < th dose independent sin 17 NA
736 175.10 humidity 50.0 43200 < th dose dependent rect. 8 1
744 175.12 radiation 40.0 90 < th dose dependent rect. 5 6
745 175.13 radiation 30.0 90 < th dose independent rect. 5 4
751 175.14 temperature 25.0 14400 < th dose dependent rect. 7 5
756 175.15 temperature 25.0 14400 < th dose dependent rect. 9 1
769 175.21 temperature 25.0 1440 < th dose dependent rect. 9 1
773 175.22 wind 1.0 43200 > th dose independent rect. 6 18
803 175.30 radiation 20.0 4320 < th dose independent rect. 23 8
829 175.35 temperature 20.0 90 < th dose independent rect. 1 12
856 175.41 wind 5.0 14400 < th dose independent rect. 20 14
863 175.42 humidity 90.0 14400 > th dose dependent rect. 3 19
896 175.49 wind 5.0 14400 > th dose independent rect. 20 14
901 175.49 wind 1.0 43200 < th dose dependent rect. 7 17
906 175.50 wind 5.0 10 < th dose dependent rect. 6 3
907 175.50 wind 5.0 14400 > th dose dependent rect. 19 16
912 175.51 temperature 20.0 90 < th dose independent rect. 1 14
969 175.58 temperature 25.0 10 < th dose dependent rect. 24 12
988 175.62 temperature 25.0 14400 < th dose dependent rect. 7 14
996 175.64 radiation 1.0 14400 < th dose independent rect. 7 3