Os12g0114400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os12g0114400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.03 | 0.607 | 4.18 | 1.13 | 2.34 | 0.562 | 0.797 | 4.06 | 0.497 | 19.6 | 25.49 | 7 | -- | -- |
| 172.09 | 0.611 | 4.22 | 0.771 | 2.34 | 0.999 | 0.791 | -- | 0.455 | 19.6 | 27.2 | 39 | -- | -- |
| 168.8 | 0.605 | 4.18 | 1.1 | 2.34 | 0.579 | -- | 4.07 | 0.499 | 19.6 | 25.6 | 6 | -- | -- |
| 173.51 | 0.613 | 4.22 | 0.694 | 2.32 | 1.05 | -- | -- | 0.441 | 19.6 | 27.13 | 40 | -- | -- |
| 368.27 | 0.894 | 4.12 | 1.34 | -- | 1.86 | -- | 4.84 | 0.466 | -- | 24.3 | 423 | -- | -- |
| 185.32 | 0.638 | 4.22 | 0.837 | 2.46 | -- | 0.995 | -- | 0.439 | 19.2 | -- | -- | -- | -- |
| 187.95 | 0.642 | 4.22 | 0.816 | 2.47 | -- | -- | -- | 0.442 | 19.2 | -- | -- | -- | -- |
| 353.59 | 0.876 | 4.21 | 0.366 | -- | 2.32 | -- | -- | 0.181 | -- | 24.4 | 458 | -- | -- |
| 185.29 | 0.634 | 4.24 | -- | 2.27 | 1.13 | -- | -- | 0.333 | 19.8 | 26.22 | 62 | -- | -- |
| 509.59 | 1.05 | 4.16 | 0.771 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 205.52 | 0.671 | 4.24 | -- | 2.46 | -- | -- | -- | 0.351 | 19.2 | -- | -- | -- | -- |
| 356.99 | 0.88 | 4.23 | -- | -- | 2.38 | -- | -- | 0.128 | -- | 24.3 | 461 | -- | -- |
| 525.26 | 1.07 | 4.18 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.37 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 163.68 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 10 | 163.86 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 8 |
| 17 | 164.13 | temperature | 25 | 10 | > th | dose dependent | sin | 22 | NA |
| 38 | 164.58 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 126 | 165.75 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 16 |
| 236 | 166.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 239 | 166.44 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 315 | 166.81 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 9 |
| 377 | 166.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 383 | 166.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 457 | 167.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 477 | 167.34 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 550 | 167.58 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 646 | 167.95 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 8 |
| 673 | 168.06 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 9 |
| 674 | 168.06 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 21 |
| 678 | 168.08 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 717 | 168.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 735 | 168.29 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 744 | 168.31 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 23 |
| 745 | 168.31 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 23 |
| 807 | 168.50 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 808 | 168.51 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 20 |
| 818 | 168.54 | radiation | 40 | 270 | < th | dose independent | rect. | 14 | 23 |
| 898 | 168.77 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 22 |
| 923 | 168.88 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 972 | 169.11 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 976 | 169.12 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 20 |