Os12g0114100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MAP kinase-like protein.
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Os12g0114100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MAP kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.95 | 0.304 | 13.1 | 1.19 | 1.41 | -0.876 | -0.398 | 0.424 | 0.526 | 5.26 | 19.25 | 254 | -- | -- |
| 42.06 | 0.302 | 13.1 | 1.12 | 1.41 | -0.859 | -0.448 | -- | 0.502 | 5.26 | 19.29 | 240 | -- | -- |
| 42.2 | 0.303 | 13.1 | 1.23 | 1.43 | -0.898 | -- | 0.68 | 0.538 | 5.28 | 18.32 | 239 | -- | -- |
| 42.58 | 0.304 | 13.1 | 1.12 | 1.43 | -0.888 | -- | -- | 0.509 | 5.26 | 17.9 | 241 | -- | -- |
| 100.81 | 0.468 | 13.1 | 1.71 | -- | -2.16 | -- | 3.04 | 0.712 | -- | 24.2 | 295 | -- | -- |
| 53.7 | 0.344 | 13.2 | 0.907 | 1.73 | -- | -0.265 | -- | 0.357 | 5.13 | -- | -- | -- | -- |
| 53.88 | 0.344 | 13.2 | 0.907 | 1.73 | -- | -- | -- | 0.358 | 5.13 | -- | -- | -- | -- |
| 104.57 | 0.476 | 13.1 | 1.28 | -- | -1.92 | -- | -- | 0.594 | -- | 24.2 | 282 | -- | -- |
| 71.63 | 0.394 | 13.2 | -- | 1.56 | -0.472 | -- | -- | 0.319 | 5.31 | 22 | 147 | -- | -- |
| 210.17 | 0.677 | 13.2 | 0.968 | -- | -- | -- | -- | 0.402 | -- | -- | -- | -- | -- |
| 75.56 | 0.407 | 13.2 | -- | 1.74 | -- | -- | -- | 0.257 | 5.11 | -- | -- | -- | -- |
| 146.67 | 0.564 | 13.2 | -- | -- | -1.74 | -- | -- | 0.416 | -- | 24.5 | 281 | -- | -- |
| 234.9 | 0.715 | 13.2 | -- | -- | -- | -- | -- | 0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.40 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 64 | 38.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 5 |
| 90 | 39.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 113 | 39.88 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 116 | 39.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 120 | 39.92 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 132 | 40.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 167 | 40.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 199 | 40.62 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 212 | 40.70 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 13 | 5 |
| 215 | 40.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 6 |
| 220 | 40.75 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 21 |
| 230 | 40.78 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 239 | 40.83 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 254 | 40.89 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 270 | 40.94 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 364 | 41.36 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 14 |
| 368 | 41.39 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 6 |
| 414 | 41.57 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 13 | 5 |
| 432 | 41.65 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 438 | 41.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 457 | 41.72 | humidity | 70 | 270 | < th | dose independent | rect. | 11 | 5 |
| 478 | 41.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 524 | 41.90 | radiation | 1 | 270 | > th | dose dependent | sin | 18 | NA |
| 540 | 41.95 | radiation | 1 | 90 | > th | dose independent | sin | 16 | NA |
| 541 | 41.95 | radiation | 1 | 90 | < th | dose independent | sin | 16 | NA |
| 543 | 41.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 553 | 41.99 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 574 | 42.04 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 2 |
| 575 | 42.04 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 593 | 42.08 | radiation | 1 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 614 | 42.12 | humidity | 90 | 10 | < th | dose dependent | rect. | 12 | 7 |
| 635 | 42.19 | radiation | 1 | 90 | > th | dose independent | rect. | 13 | 6 |
| 664 | 42.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 665 | 42.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 676 | 42.26 | temperature | 15 | 270 | > th | dose dependent | sin | 22 | NA |
| 699 | 42.30 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 708 | 42.33 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 709 | 42.33 | radiation | 40 | 270 | < th | dose dependent | sin | 19 | NA |
| 722 | 42.37 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 7 |
| 771 | 42.44 | temperature | 15 | 90 | > th | dose dependent | sin | 20 | NA |
| 814 | 42.51 | radiation | 1 | 90 | < th | dose dependent | sin | 17 | NA |
| 840 | 42.54 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 14 |
| 856 | 42.55 | radiation | 10 | 90 | < th | dose dependent | sin | 15 | NA |
| 948 | 42.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 955 | 42.68 | humidity | 80 | 270 | < th | dose independent | rect. | 13 | 2 |