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Os12g0113500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase PK4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.37 (0.0585) R2 : 0.82
β1 : -7.29 (0.215) R2dD : 0.475 R2D : 0.332
β2 : 3.75 (0.148) R2dC : 0.281 R2C : 0.18
β3 : -1.75 (0.149) R2dE : 0.0621 R2E : -0.0584
β4 : 5.94 (0.554) R2dD*C : 0.0427 R2D*C : -0.0199
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.32 (0.125) R2dN8 : 0.181 R2N8 : 0.0433
σ : 1.09
deviance : 550.94
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_____
C
peak time of C : 13.7
E
wheather : radiation
threshold : 51.49
memory length : 114
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.42
open length of G : 17.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
541.74 1.09 9.36 -7.36 3.89 -1.85 6.55 -1.82 -2.29 13.7 57.4 112 3.48 17.3
550.94 1.09 9.37 -7.29 3.75 -1.75 5.94 -- -2.32 13.7 51.49 114 3.42 17.3
676.46 1.21 9.33 -7.08 3.8 -1.78 -- 0.795 -2.25 13.7 54.36 113 3.48 17.3
676.51 1.21 9.35 -7.09 3.52 -1.76 -- -- -2.24 13.7 36.83 115 3.42 17.2
680 1.21 9.53 -7.56 -- -3.25 -- -5.09 -2.5 -- 28.43 152 2.14 24
721.73 1.26 9.36 -7.3 3.23 -- 5.88 -- -2.28 13.9 -- -- -- --
855.38 1.37 9.34 -7.12 3.23 -- -- -- -2.24 13.9 -- -- -- --
757.78 1.28 9.39 -7.28 -- -3.33 -- -- -2.43 -- 27.69 140 14.2 22.5
1999.69 2.08 9.24 -- 3.85 -1.71 -- -- -1.49 13.8 50.51 51 3.73 17.3
1485.66 1.8 9.38 -7.25 -- -- -- -- -2.32 -- -- -- -- --
2191.76 2.19 9.16 -- 3.36 -- -- -- -1.45 13.9 -- -- -- --
2063.32 2.12 9.12 -- -- -3.01 -- -- -1.34 -- 73.45 176 15.7 16
2873.53 2.5 9.19 -- -- -- -- -- -1.51 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 548.15 atmosphere 1000.0 30 > th dose independent rect. 4 17
2 550.03 radiation 40.0 90 < th dose dependent rect. 4 17
6 553.03 radiation 1.0 1440 < th dose dependent rect. 22 7
11 556.68 radiation 40.0 270 < th dose dependent rect. 1 17
14 557.06 atmosphere 995.0 270 > th dose independent rect. 15 15
15 557.13 radiation 30.0 90 < th dose independent rect. 3 18
27 561.56 radiation 30.0 10 < th dose independent rect. 4 17
40 564.81 precipitation 0.1 270 < th dose independent rect. 2 17
41 564.81 precipitation 0.1 270 < th dose dependent rect. 2 17
43 564.85 radiation 40.0 270 < th dose independent rect. 1 18
54 567.06 radiation 40.0 270 < th dose independent rect. 14 16
74 569.76 wind 9.0 270 < th dose independent rect. 6 9
80 570.10 precipitation 0.1 270 < th dose independent rect. 15 15
81 570.10 precipitation 0.1 270 < th dose dependent rect. 15 15
83 570.25 wind 7.0 270 < th dose independent rect. 19 7
87 570.88 humidity 80.0 14400 > th dose independent rect. 22 7
92 571.26 atmosphere 1000.0 90 > th dose independent rect. 15 6
99 571.73 precipitation 0.1 270 < th dose independent rect. 6 9
100 571.73 temperature 15.0 270 > th dose independent rect. 15 15
101 571.73 precipitation 0.1 270 < th dose dependent rect. 6 9
103 571.84 temperature 10.0 270 > th dose independent rect. 6 9
104 571.84 atmosphere 1015.0 270 < th dose independent rect. 6 9
109 572.01 radiation 1.0 270 < th dose dependent rect. 19 7
111 572.03 temperature 10.0 270 > th dose independent rect. 19 7
112 572.03 temperature 30.0 270 < th dose independent rect. 19 7
113 572.03 humidity 50.0 270 > th dose independent rect. 19 7
114 572.03 atmosphere 995.0 270 > th dose independent rect. 19 7
115 572.03 radiation 1.0 270 < th dose independent rect. 19 7
120 572.03 temperature 10.0 270 > th dose independent rect. 2 17
121 572.03 atmosphere 1015.0 270 < th dose independent rect. 2 17
126 572.04 humidity 70.0 270 > th dose independent rect. 19 7
140 572.86 atmosphere 1000.0 270 > th dose independent rect. 13 7
145 573.46 radiation 40.0 270 < th dose independent rect. 11 8
154 573.95 humidity 80.0 14400 > th dose independent rect. 2 2
163 574.44 precipitation 0.1 270 < th dose independent rect. 19 7
164 574.44 precipitation 0.1 270 < th dose dependent rect. 19 7
176 575.23 humidity 50.0 270 > th dose dependent rect. 19 6
177 575.28 wind 9.0 270 < th dose independent rect. 15 15
191 575.97 radiation 30.0 10 < th dose independent rect. 2 19
194 576.07 radiation 1.0 270 < th dose dependent rect. 5 21
196 576.12 atmosphere 995.0 270 > th dose independent rect. 6 8
208 576.46 humidity 80.0 14400 < th dose dependent rect. 3 1
220 576.87 wind 9.0 14400 < th dose independent rect. 13 1
230 577.71 wind 9.0 270 < th dose independent rect. 2 17
232 577.77 atmosphere 995.0 270 > th dose dependent rect. 14 5
241 578.11 radiation 40.0 270 < th dose independent rect. 13 6
242 578.15 wind 1.0 43200 < th dose dependent rect. 9 2
285 579.45 wind 7.0 30 < th dose independent rect. 21 7
295 579.64 wind 1.0 43200 < th dose dependent rect. 23 3
326 580.46 humidity 80.0 14400 < th dose dependent rect. 22 7
333 580.60 wind 7.0 14400 > th dose dependent rect. 3 12
349 581.27 humidity 80.0 14400 < th dose independent rect. 22 8
352 581.30 atmosphere 995.0 270 > th dose dependent rect. 13 7
355 581.38 wind 9.0 14400 > th dose dependent rect. 18 21
363 581.59 wind 9.0 14400 < th dose independent rect. 3 12
364 581.64 wind 9.0 14400 < th dose independent rect. 22 17
365 581.66 humidity 80.0 14400 < th dose independent rect. 2 2
366 581.66 wind 9.0 14400 > th dose dependent rect. 20 19
369 581.71 wind 7.0 14400 > th dose dependent rect. 23 16
397 582.38 wind 9.0 14400 > th dose independent rect. 19 20
411 582.66 radiation 1.0 30 < th dose dependent rect. 21 7
413 582.70 temperature 10.0 30 > th dose independent rect. 21 7
414 582.70 temperature 30.0 30 < th dose independent rect. 21 7
415 582.70 humidity 50.0 30 > th dose independent rect. 21 7
418 582.70 atmosphere 995.0 30 > th dose independent rect. 21 7
419 582.70 radiation 1.0 30 < th dose independent rect. 21 7
424 582.70 temperature 10.0 30 > th dose independent rect. 4 17
426 582.70 atmosphere 1015.0 30 < th dose independent rect. 4 17
438 582.83 wind 9.0 14400 > th dose independent rect. 22 17
441 582.87 radiation 30.0 270 < th dose dependent rect. 1 10
458 583.20 radiation 40.0 90 < th dose dependent rect. 23 23
463 583.30 atmosphere 995.0 270 > th dose dependent rect. 15 3
469 583.37 radiation 40.0 90 < th dose dependent rect. 15 18
489 583.88 atmosphere 1000.0 10 > th dose independent rect. 16 16
491 583.91 radiation 40.0 90 < th dose dependent rect. 15 20
492 583.92 precipitation 0.1 30 < th dose independent rect. 4 17
493 583.92 precipitation 0.1 30 < th dose dependent rect. 4 17
503 584.03 radiation 40.0 90 < th dose dependent rect. 15 16
508 584.13 radiation 40.0 90 < th dose dependent rect. 11 10
522 584.39 precipitation 0.1 90 < th dose independent rect. 21 6
523 584.39 precipitation 0.1 90 < th dose dependent rect. 21 6
535 584.55 humidity 50.0 270 > th dose independent rect. 6 8
536 584.55 wind 9.0 43200 > th dose dependent rect. 13 1
541 584.61 atmosphere 1000.0 10 > th dose independent rect. 15 7
545 584.84 wind 1.0 43200 < th dose dependent rect. 20 6
549 584.92 wind 9.0 14400 > th dose independent rect. 13 1
573 585.04 radiation 40.0 90 < th dose dependent rect. 15 6
583 585.24 radiation 40.0 10 < th dose dependent rect. 11 10
601 585.58 wind 9.0 270 < th dose dependent rect. 19 6
621 585.69 wind 9.0 270 < th dose independent rect. 19 19
646 585.77 humidity 80.0 14400 < th dose dependent rect. 22 1
657 585.96 wind 9.0 14400 > th dose independent rect. 3 12
667 586.11 wind 1.0 43200 < th dose dependent rect. 24 1
668 586.12 radiation 40.0 43200 > th dose independent rect. 10 1
687 586.43 radiation 40.0 90 < th dose dependent rect. 13 8
690 586.47 radiation 1.0 270 > th dose independent rect. 6 9
699 586.60 wind 9.0 30 < th dose independent rect. 4 17
708 586.84 wind 1.0 270 > th dose independent rect. 14 5
709 586.84 wind 7.0 270 < th dose dependent rect. 1 6
716 586.98 temperature 10.0 270 > th dose dependent rect. 19 6
719 587.01 wind 3.0 270 < th dose independent rect. 1 6
738 587.28 humidity 50.0 270 > th dose independent rect. 19 19
742 587.33 humidity 50.0 30 > th dose dependent rect. 21 7
752 587.41 wind 1.0 43200 < th dose dependent rect. 18 8
753 587.42 temperature 10.0 270 > th dose independent rect. 14 5
755 587.42 atmosphere 1010.0 270 < th dose independent rect. 14 5
757 587.42 temperature 10.0 270 > th dose independent rect. 19 19
758 587.42 atmosphere 995.0 270 > th dose independent rect. 19 19
769 587.64 wind 1.0 43200 > th dose independent rect. 9 2
780 587.77 wind 1.0 43200 < th dose independent rect. 9 2
787 587.95 temperature 10.0 90 > th dose dependent rect. 21 6
813 588.25 radiation 30.0 43200 < th dose independent rect. 11 1
827 588.48 wind 9.0 90 < th dose independent rect. 21 18
829 588.55 atmosphere 1015.0 270 < th dose independent rect. 19 6
832 588.58 precipitation 0.1 270 < th dose independent rect. 14 5
833 588.58 precipitation 0.1 270 < th dose dependent rect. 14 5
835 588.62 wind 3.0 270 < th dose independent rect. 2 4
849 588.88 wind 9.0 14400 < th dose independent rect. 19 20
862 589.03 wind 7.0 14400 > th dose dependent rect. 10 5
873 589.20 humidity 50.0 270 > th dose independent rect. 20 17
885 589.39 temperature 10.0 90 > th dose independent rect. 21 18
887 589.43 radiation 40.0 14400 < th dose dependent rect. 22 7
913 589.96 wind 9.0 270 < th dose independent rect. 14 5