FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0111800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.99 (0.064) R2 : 0.366
β1 : 2.2 (0.236) R2dD : 0.13 R2D : 0.0438
β2 : 1.45 (0.156) R2dC : 0.124 R2C : 0.162
β3 : 13.6 (1.55) R2dE : 0.952 R2E : -0.729
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 59.6 (7.2) R2dD*E : 0.842 R2D*E : -0.878
γ1 : 0.779 (0.134) R2dN8 : 0.0658 R2N8 : 0.0152
σ : 1.17
deviance : 626.71
__
_____
C
peak time of C : 2.67
E
wheather : wind
threshold : 6.888
memory length : 692
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.9
open length of G : 5.28

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
622.01 1.17 4 2.24 1.46 13.7 1.43 59.5 0.792 2.63 6.994 701 19.9 5.08
711.43 1.25 3.88 1.71 1.63 1.01 2.24 -- 0.726 2.89 7 45 21 6.4
626.71 1.17 3.99 2.2 1.45 13.6 -- 59.6 0.779 2.67 6.888 692 19.9 5.28
710.81 1.24 3.87 1.67 1.59 1.5 -- -- 0.771 2.73 5.432 1018 20.8 5.76
745.99 1.27 3.99 2.23 -- 14.1 -- 58.9 0.809 -- 6.872 685 19.8 5.13
712.43 1.25 3.88 1.7 1.64 -- 2.23 -- 0.722 2.88 -- -- -- --
729.3 1.26 3.89 1.65 1.64 -- -- -- 0.709 2.85 -- -- -- --
720.45 1.25 3.87 1.75 -- 1.48 -- -- 0.82 -- -3.099e-07 2004 19.6 5.62
769.26 1.29 3.92 -- 1.61 1.85 -- -- 0.631 2.48 4.586 674 22.3 4.19
885.56 1.39 3.88 1.72 -- -- -- -- 0.751 -- -- -- -- --
800.9 1.32 3.93 -- 1.68 -- -- -- 0.526 2.86 -- -- -- --
789.8 1.31 3.92 -- -- 1.54 -- -- 0.542 -- -0.07462 1980 19.9 5.7
963.44 1.45 3.92 -- -- -- -- -- 0.561 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 626.45 wind 7.0 720 > th dose independent rect. 20 5
2 626.94 wind 7.0 720 > th dose dependent rect. 20 5
11 628.04 wind 7.0 720 > th dose dependent rect. 20 13
53 635.02 wind 7.0 720 > th dose independent rect. 20 2
54 635.07 wind 7.0 720 > th dose dependent rect. 20 2
56 637.56 radiation 10.0 1440 < th dose dependent rect. 10 9
59 637.64 radiation 10.0 1440 < th dose dependent rect. 10 13
63 637.69 radiation 10.0 1440 < th dose dependent rect. 10 19
64 637.71 radiation 10.0 1440 < th dose dependent rect. 10 17
95 639.47 precipitation 0.1 720 > th dose independent rect. 20 5
96 639.47 precipitation 0.1 720 > th dose dependent rect. 20 5
99 639.72 temperature 30.0 1440 < th dose dependent rect. 13 1
123 640.29 precipitation 0.1 720 > th dose independent rect. 20 7
124 640.29 precipitation 0.1 720 > th dose dependent rect. 20 7
129 640.75 radiation 10.0 1440 < th dose dependent sin 18 NA
130 640.81 temperature 20.0 1440 > th dose dependent rect. 13 2
179 642.86 temperature 30.0 1440 < th dose dependent rect. 13 4
233 644.30 wind 7.0 720 > th dose dependent rect. 23 2
240 644.64 wind 7.0 720 > th dose independent rect. 23 2
250 644.93 radiation 10.0 1440 > th dose independent rect. 10 20
252 644.94 radiation 10.0 1440 > th dose independent rect. 10 8
292 645.57 precipitation 0.1 720 > th dose independent rect. 23 2
293 645.57 precipitation 0.1 720 > th dose dependent rect. 23 2
334 646.44 humidity 50.0 4320 < th dose dependent rect. 9 5
353 646.46 wind 5.0 720 > th dose independent rect. 1 1
354 646.46 wind 5.0 720 > th dose dependent rect. 1 1
385 646.65 radiation 10.0 1440 < th dose independent rect. 11 19
402 646.78 radiation 10.0 1440 < th dose independent rect. 11 8
407 646.83 radiation 10.0 1440 < th dose independent rect. 11 12
414 646.88 radiation 10.0 1440 < th dose independent rect. 11 16
420 646.99 temperature 25.0 1440 > th dose independent rect. 11 10
487 647.79 humidity 50.0 4320 < th dose dependent rect. 12 1
497 647.87 radiation 1.0 1440 < th dose independent rect. 15 3
505 647.95 radiation 10.0 1440 < th dose dependent rect. 10 4
518 648.16 temperature 25.0 1440 < th dose independent rect. 11 10
567 648.62 radiation 1.0 1440 < th dose independent rect. 14 15
569 648.64 radiation 1.0 1440 < th dose independent rect. 14 9
577 648.70 radiation 10.0 1440 > th dose independent sin 17 NA
596 648.79 humidity 50.0 4320 < th dose dependent sin 8 NA
724 649.27 temperature 25.0 1440 < th dose independent rect. 13 8
740 649.51 radiation 1.0 1440 < th dose independent sin 17 NA
742 649.53 temperature 25.0 4320 < th dose dependent rect. 2 1
744 649.58 temperature 25.0 4320 < th dose dependent rect. 5 1
757 649.69 radiation 10.0 1440 < th dose dependent rect. 13 1
767 649.80 temperature 15.0 4320 > th dose dependent rect. 2 1
779 649.89 temperature 25.0 4320 < th dose dependent rect. 2 5
790 649.98 temperature 15.0 4320 > th dose dependent rect. 5 1
803 650.06 temperature 25.0 1440 < th dose independent rect. 15 5
816 650.18 temperature 25.0 1440 > th dose independent sin 21 NA
848 650.39 temperature 15.0 4320 > th dose dependent rect. 2 4
854 650.42 radiation 10.0 1440 > th dose independent rect. 11 3