Os12g0111700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0111700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.16 | 0.275 | 9.57 | 1.75 | 0.614 | -0.639 | 0.0472 | 1.37 | 0.18 | 15.4 | 20.54 | 1593 | -- | -- |
| 37.06 | 0.284 | 9.6 | 1.65 | 0.611 | -0.923 | 0.0778 | -- | 0.175 | 15.4 | 19.8 | 3006 | -- | -- |
| 34.17 | 0.272 | 9.57 | 1.76 | 0.614 | -0.639 | -- | 1.37 | 0.18 | 15.5 | 20.53 | 1591 | -- | -- |
| 37.04 | 0.283 | 9.6 | 1.66 | 0.614 | -0.922 | -- | -- | 0.17 | 15.5 | 19.71 | 3006 | -- | -- |
| 54.2 | 0.343 | 9.55 | 1.83 | -- | -0.631 | -- | 1.36 | 0.217 | -- | 20.5 | 2720 | -- | -- |
| 51.86 | 0.338 | 9.65 | 1.16 | 0.623 | -- | -0.0215 | -- | -0.058 | 15.5 | -- | -- | -- | -- |
| 51.86 | 0.337 | 9.65 | 1.16 | 0.623 | -- | -- | -- | -0.0581 | 15.5 | -- | -- | -- | -- |
| 56.62 | 0.35 | 9.6 | 1.63 | -- | -0.943 | -- | -- | 0.151 | -- | 19.76 | 2685 | -- | -- |
| 83.11 | 0.427 | 9.67 | -- | 0.664 | -0.334 | -- | -- | -0.14 | 15.3 | 19.71 | 3006 | -- | -- |
| 73.56 | 0.401 | 9.65 | 1.14 | -- | -- | -- | -- | -0.0747 | -- | -- | -- | -- | -- |
| 87.48 | 0.438 | 9.68 | -- | 0.6 | -- | -- | -- | -0.188 | 15.5 | -- | -- | -- | -- |
| 95.88 | 0.456 | 9.71 | -- | -- | 0.369 | -- | -- | -0.269 | -- | 26.4 | 136 | -- | -- |
| 107.63 | 0.484 | 9.68 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 4 | 34.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 24 | 34.39 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 34 | 34.43 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 86 | 34.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 91 | 34.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 105 | 34.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 114 | 34.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 11 |
| 132 | 34.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 269 | 35.06 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 316 | 35.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 319 | 35.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 396 | 35.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 405 | 35.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 427 | 35.35 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 490 | 35.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 497 | 35.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 501 | 35.49 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 528 | 35.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 557 | 35.61 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 560 | 35.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 575 | 35.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 610 | 35.71 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 623 | 35.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 653 | 35.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 657 | 35.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 669 | 35.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 673 | 35.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 734 | 36.04 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 759 | 36.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 972 | 36.43 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 21 |
| 981 | 36.44 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 19 |