Os12g0109800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os12g0109800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 291.31 | 0.802 | 5.6 | -3.46 | 0.745 | 2.16 | 0.26 | -4.35 | -0.196 | 0.622 | 28.44 | 1265 | -- | -- |
| 293.05 | 0.797 | 5.49 | -2.54 | 0.754 | 1.67 | 0.132 | -- | -0.0931 | 0.641 | 28.47 | 1258 | -- | -- |
| 291.6 | 0.795 | 5.6 | -3.46 | 0.744 | 2.16 | -- | -4.27 | -0.192 | 0.618 | 28.46 | 1264 | -- | -- |
| 293.14 | 0.797 | 5.49 | -2.57 | 0.748 | 1.68 | -- | -- | -0.0915 | 0.557 | 28.48 | 1260 | -- | -- |
| 323.41 | 0.838 | 5.59 | -3.44 | -- | 2.32 | -- | -3.91 | -0.252 | -- | 27.9 | 1221 | -- | -- |
| 424 | 0.965 | 5.53 | -2.08 | 1.01 | -- | 0.593 | -- | -0.255 | 0.796 | -- | -- | -- | -- |
| 425.49 | 0.966 | 5.53 | -2.1 | 1.01 | -- | -- | -- | -0.258 | 0.783 | -- | -- | -- | -- |
| 324.83 | 0.839 | 5.51 | -2.65 | -- | 1.96 | -- | -- | -0.233 | -- | 27.11 | 1200 | -- | -- |
| 456.12 | 0.995 | 5.42 | -- | 0.79 | 1.3 | -- | -- | 0.255 | 0.352 | 31 | 1182 | -- | -- |
| 488.82 | 1.03 | 5.52 | -2.06 | -- | -- | -- | -- | -0.24 | -- | -- | -- | -- | -- |
| 541.51 | 1.09 | 5.48 | -- | 0.974 | -- | -- | -- | -0.0246 | 0.684 | -- | -- | -- | -- |
| 491.7 | 1.03 | 5.4 | -- | -- | 1.47 | -- | -- | 0.295 | -- | 31.1 | 1156 | -- | -- |
| 600.92 | 1.14 | 5.46 | -- | -- | -- | -- | -- | -0.0112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 295.51 | temperature | 30 | 1440 | > th | dose dependent | sin | 14 | NA |
| 5 | 296.04 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 98 | 297.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 135 | 298.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 153 | 298.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 154 | 298.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 155 | 298.61 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 156 | 298.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 159 | 298.63 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 252 | 298.64 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 261 | 298.69 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 345 | 300.29 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 412 | 301.14 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 419 | 301.61 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 420 | 301.64 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 456 | 302.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 466 | 302.80 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 476 | 303.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 495 | 303.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 522 | 303.65 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 524 | 303.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 526 | 303.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 529 | 303.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 530 | 303.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 544 | 303.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 549 | 303.88 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 565 | 304.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 602 | 304.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 22 |
| 604 | 304.26 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 9 |
| 614 | 304.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 644 | 304.50 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 654 | 304.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 661 | 304.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 665 | 304.62 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 680 | 304.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 688 | 304.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 697 | 304.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 699 | 304.64 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 702 | 304.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 840 | 304.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 857 | 304.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 902 | 305.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 912 | 305.13 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |