Os12g0109600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os12g0109600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.31 | 0.449 | 6.6 | 2.4 | 0.978 | -1.18 | 1.63 | -0.54 | 0.274 | 18.1 | 23.1 | 3992 | -- | -- |
| 89.79 | 0.441 | 6.64 | 2.3 | 0.981 | -1.17 | 1.67 | -- | 0.173 | 18.1 | 23.4 | 2667 | -- | -- |
| 97.8 | 0.461 | 6.6 | 2.39 | 0.979 | -1.17 | -- | -0.516 | 0.279 | 18.1 | 23.1 | 3945 | -- | -- |
| 96.53 | 0.458 | 6.63 | 2.27 | 0.979 | -1.16 | -- | -- | 0.18 | 18.1 | 23.4 | 2658 | -- | -- |
| 146.56 | 0.564 | 6.58 | 2.24 | -- | -1.17 | -- | -0.165 | 0.307 | -- | 23.72 | 4972 | -- | -- |
| 141.22 | 0.557 | 6.52 | 2.8 | 0.934 | -- | 1.59 | -- | 0.693 | 18.6 | -- | -- | -- | -- |
| 147.56 | 0.569 | 6.52 | 2.78 | 0.94 | -- | -- | -- | 0.697 | 18.6 | -- | -- | -- | -- |
| 143.71 | 0.558 | 6.6 | 2.21 | -- | -1.09 | -- | -- | 0.242 | -- | 23.6 | 3466 | -- | -- |
| 109.43 | 0.487 | 6.73 | -- | 0.949 | -2.39 | -- | -- | -0.255 | 18.4 | 19.3 | 47520 | -- | -- |
| 193.63 | 0.65 | 6.5 | 2.76 | -- | -- | -- | -- | 0.678 | -- | -- | -- | -- | -- |
| 351.36 | 0.877 | 6.59 | -- | 0.906 | -- | -- | -- | 0.387 | 18.8 | -- | -- | -- | -- |
| 156.03 | 0.582 | 6.71 | -- | -- | -2.37 | -- | -- | -0.268 | -- | 19.34 | 47520 | -- | -- |
| 394.32 | 0.927 | 6.57 | -- | -- | -- | -- | -- | 0.372 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 88.26 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 68 | 89.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 116 | 90.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 119 | 90.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 123 | 90.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 17 |
| 126 | 90.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 138 | 90.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 304 | 90.92 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 307 | 90.93 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 334 | 91.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 339 | 91.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 366 | 91.08 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 460 | 91.33 | temperature | 20 | 4320 | > th | dose dependent | sin | 12 | NA |
| 520 | 91.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 618 | 91.62 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 713 | 91.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 21 |