Os12g0109300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os12g0109300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.18 | 0.524 | 6.28 | 0.798 | 2.69 | 1.18 | 0.129 | 0.791 | 0.105 | 18.8 | 25.33 | 30 | -- | -- |
| 124.37 | 0.519 | 6.29 | 0.707 | 2.65 | 1.21 | 0.144 | -- | 0.0733 | 18.8 | 25.04 | 55 | -- | -- |
| 124.16 | 0.523 | 6.27 | 0.812 | 2.72 | 1.17 | -- | 0.88 | 0.108 | 18.8 | 25.33 | 32 | -- | -- |
| 124.43 | 0.52 | 6.29 | 0.703 | 2.65 | 1.22 | -- | -- | 0.0728 | 18.8 | 25.05 | 55 | -- | -- |
| 327.72 | 0.843 | 6.34 | -0.215 | -- | 3.39 | -- | -3.92 | -0.321 | -- | 24.52 | 391 | -- | -- |
| 147.45 | 0.569 | 6.27 | 0.906 | 2.97 | -- | 0.545 | -- | 0.164 | 18.3 | -- | -- | -- | -- |
| 148.19 | 0.57 | 6.27 | 0.899 | 2.98 | -- | -- | -- | 0.166 | 18.3 | -- | -- | -- | -- |
| 333.26 | 0.85 | 6.28 | 0.306 | -- | 3.07 | -- | -- | -0.184 | -- | 24.43 | 388 | -- | -- |
| 135.86 | 0.543 | 6.32 | -- | 2.55 | 1.38 | -- | -- | -0.103 | 18.9 | 22.77 | 118 | -- | -- |
| 608.14 | 1.15 | 6.21 | 0.821 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 169.51 | 0.609 | 6.29 | -- | 2.96 | -- | -- | -- | 0.0656 | 18.3 | -- | -- | -- | -- |
| 335.64 | 0.853 | 6.29 | -- | -- | 3.12 | -- | -- | -0.224 | -- | 24.4 | 389 | -- | -- |
| 625.91 | 1.17 | 6.23 | -- | -- | -- | -- | -- | 0.0108 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 8 | 113.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 14 | 113.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 9 |
| 16 | 114.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 17 | 114.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 18 | 114.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 42 | 116.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 50 | 116.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 75 | 117.95 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 91 | 118.32 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 105 | 118.64 | temperature | 20 | 90 | > th | dose dependent | sin | 23 | NA |
| 119 | 118.86 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 16 |
| 153 | 119.59 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 6 | 16 |
| 227 | 120.85 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 15 |
| 234 | 121.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 276 | 121.38 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 22 |
| 317 | 121.79 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 403 | 122.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 409 | 122.61 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 437 | 122.80 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 458 | 122.97 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 524 | 123.26 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 16 |
| 552 | 123.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 576 | 123.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 590 | 123.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 604 | 123.54 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 697 | 123.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 744 | 123.87 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 754 | 123.91 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 21 |
| 775 | 123.99 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 7 |
| 810 | 124.09 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 11 |
| 834 | 124.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 836 | 124.14 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 866 | 124.24 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 948 | 124.38 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 17 |
| 967 | 124.42 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 983 | 124.45 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 9 |