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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0109100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/hydrogen exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0388) R2 : 0.113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.92 (0.516) R2dE : 0.114 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.000163 (0.0817) R2dN8 : -2.12e-06 R2N8 : -0.000114
σ : 0.728
deviance : 244.4
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.05
memory length : 88
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.3
open length of G : 2.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
238.47 0.726 2.97 -0.0845 0.268 9.68 -0.435 18.2 -0.0219 2.98 1.191 93 14 1.98
243.63 0.727 2.92 -0.0442 0.324 4.35 -0.243 -- 0.0774 0.172 2.059 88 13.9 2.82
237.12 0.717 2.97 -0.0534 0.262 9.98 -- 18.7 0.0162 3.24 1.259 125 13.9 2.08
241.68 0.724 2.91 -0.0767 0.297 4.38 -- -- -0.00367 1.5 2.347 85 14.1 2.76
241.36 0.724 2.98 -0.0683 -- 10.2 -- 20 -0.0137 -- 1.228 126 13.9 2.07
272.25 0.774 2.96 -0.149 0.191 -- -0.469 -- -0.0448 2.46 -- -- -- --
273.05 0.774 2.96 -0.137 0.19 -- -- -- -0.042 2.51 -- -- -- --
244.31 0.728 2.94 -0.109 -- 4.17 -- -- 0.00495 -- 2.174 88 14.2 2.5
240.37 0.722 2.92 -- 0.32 4.35 -- -- 0.0589 2.61 2.22 88 14 2.73
275.18 0.775 2.96 -0.129 -- -- -- -- -0.0373 -- -- -- -- --
273.54 0.774 2.96 -- 0.188 -- -- -- -0.0268 2.5 -- -- -- --
244.4 0.728 2.94 -- -- 3.92 -- -- -0.000163 -- 2.05 88 14.3 2.47
275.62 0.775 2.96 -- -- -- -- -- -0.023 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 238.65 radiation 1.0 90 < th dose independent rect. 14 2
2 239.06 radiation 1.0 30 < th dose dependent rect. 15 1
19 243.11 radiation 1.0 90 < th dose independent rect. 8 8
80 249.20 wind 1.0 90 < th dose dependent rect. 24 1
81 249.54 radiation 1.0 10 < th dose dependent rect. 6 11
85 250.28 temperature 25.0 90 < th dose independent rect. 14 3
86 250.77 temperature 25.0 90 < th dose dependent rect. 14 1
91 251.19 temperature 25.0 90 < th dose independent rect. 14 1
94 251.36 temperature 25.0 90 < th dose dependent rect. 14 3
95 251.41 wind 1.0 90 < th dose independent rect. 24 1
97 251.65 wind 5.0 90 > th dose dependent rect. 22 1
112 252.79 humidity 90.0 90 > th dose independent rect. 14 1
115 252.79 humidity 90.0 90 > th dose dependent rect. 14 1
118 252.79 wind 9.0 90 > th dose dependent rect. 22 12
119 252.83 wind 9.0 1440 > th dose independent rect. 22 4
127 252.83 wind 9.0 1440 > th dose dependent rect. 22 4
136 252.88 wind 9.0 1440 > th dose independent rect. 22 1
140 252.88 wind 9.0 1440 > th dose dependent rect. 22 1
145 252.91 wind 9.0 270 > th dose independent rect. 22 4
153 252.91 wind 9.0 270 > th dose dependent rect. 22 4
161 253.03 wind 7.0 90 > th dose independent rect. 22 1
250 253.73 radiation 1.0 10 < th dose independent rect. 6 11
348 257.47 radiation 1.0 90 > th dose independent rect. 4 1
358 257.47 radiation 1.0 90 > th dose dependent rect. 4 1
372 257.61 wind 1.0 90 < th dose independent rect. 24 3
405 258.49 radiation 1.0 720 > th dose independent rect. 4 1
415 258.49 radiation 1.0 720 > th dose dependent rect. 4 1
441 258.96 wind 3.0 10 < th dose independent rect. 1 2
465 259.06 atmosphere 1010.0 10 < th dose dependent rect. 2 1
490 259.46 atmosphere 1000.0 90 < th dose independent rect. 18 2
491 259.46 atmosphere 1000.0 90 < th dose dependent rect. 18 2
531 259.98 wind 1.0 90 < th dose dependent rect. 24 3
570 260.16 wind 1.0 90 < th dose independent rect. 24 6
582 260.28 humidity 90.0 10 > th dose dependent rect. 2 1
591 260.30 wind 1.0 30 < th dose dependent rect. 6 1
666 260.83 atmosphere 1005.0 10 < th dose dependent rect. 24 2
695 260.96 radiation 10.0 1440 < th dose independent rect. 4 1
745 261.18 humidity 90.0 90 > th dose independent rect. 9 7
781 261.34 temperature 30.0 10 < th dose dependent rect. 2 1
783 261.36 humidity 70.0 90 < th dose independent rect. 18 1
785 261.36 radiation 10.0 1440 < th dose independent rect. 19 10
790 261.38 radiation 10.0 1440 < th dose independent rect. 22 7
817 261.57 radiation 10.0 1440 < th dose dependent rect. 4 1
823 261.60 wind 1.0 10 > th dose independent rect. 2 1
917 261.99 atmosphere 1005.0 30 > th dose dependent rect. 15 1
943 262.14 radiation 10.0 1440 < th dose dependent rect. 19 10
954 262.23 radiation 10.0 1440 < th dose dependent rect. 22 7
959 262.28 radiation 10.0 1440 < th dose independent rect. 24 5
968 262.32 temperature 10.0 10 > th dose independent rect. 2 1
970 262.32 temperature 30.0 10 < th dose independent rect. 2 1
971 262.32 humidity 50.0 10 > th dose independent rect. 2 1
974 262.32 atmosphere 995.0 10 > th dose independent rect. 2 1
975 262.32 atmosphere 1010.0 10 < th dose independent rect. 2 1
977 262.32 radiation 1.0 10 < th dose independent rect. 2 1
982 262.32 precipitation 0.1 10 < th dose independent rect. 2 1
983 262.32 temperature 10.0 10 > th dose independent rect. 3 23
984 262.32 radiation 1.0 10 < th dose dependent rect. 2 1
989 262.32 precipitation 0.1 10 < th dose dependent rect. 2 1
997 262.36 humidity 50.0 10 > th dose dependent rect. 2 1