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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0108800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0436) R2 : 0.0114
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.211 (0.0919) R2dN8 : 0.0147 R2N8 : 0.0114
σ : 0.822
deviance : 310.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
289.03 0.799 2.54 2.56 0.175 -17.1 -0.0578 110 -0.154 21.3 998.8 87 -- --
298.3 0.811 2.97 0.103 0.166 1.19 -0.178 -- -0.162 20.6 998.8 87 -- --
287.75 0.79 2.57 2.34 0.167 -17.4 -- 112 -0.134 22 998.4 83 -- --
296.55 0.802 2.97 0.0975 0.17 1.23 -- -- -0.156 20.8 999.5 149 -- --
289.3 0.792 2.57 2.36 -- -17.8 -- 115 -0.169 -- 998.4 86 -- --
307.51 0.822 2.97 0.173 0.17 -- -0.185 -- -0.189 20.4 -- -- -- --
307.57 0.821 2.97 0.177 0.17 -- -- -- -0.19 21.1 -- -- -- --
298.05 0.804 2.96 0.0921 -- 1.23 -- -- -0.158 -- 999.5 168 -- --
296.74 0.802 2.97 -- 0.167 1.23 -- -- -0.162 21.2 999.6 145 -- --
309.24 0.822 2.97 0.178 -- -- -- -- -0.191 -- -- -- -- --
308.4 0.821 2.98 -- 0.17 -- -- -- -0.21 21.2 -- -- -- --
298.27 0.804 2.96 -- -- 1.26 -- -- -0.167 -- 999.5 175 -- --
310.07 0.822 2.97 -- -- -- -- -- -0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.38 wind 3 90 > th dose dependent rect. 4 1
2 280.95 wind 9 1440 > th dose dependent rect. 12 1
4 282.15 wind 9 1440 > th dose independent rect. 12 1
6 282.67 wind 3 90 > th dose independent rect. 4 1
8 282.83 atmosphere 1000 10 < th dose independent rect. 15 1
16 282.93 atmosphere 1000 90 < th dose dependent rect. 15 1
49 285.39 atmosphere 1000 10 < th dose independent rect. 15 8
60 285.75 atmosphere 1000 30 < th dose dependent rect. 15 8
76 286.13 atmosphere 1010 270 < th dose independent rect. 16 10
92 286.55 atmosphere 1000 90 < th dose dependent rect. 2 14
97 286.84 wind 9 720 > th dose independent rect. 12 4
98 286.88 wind 9 720 > th dose dependent rect. 12 4
104 287.12 wind 9 1440 > th dose independent rect. 11 6
107 287.22 atmosphere 1000 90 < th dose dependent rect. 14 19
133 288.47 wind 9 1440 < th dose independent rect. 12 2
137 288.55 wind 9 1440 > th dose independent rect. 20 21
140 288.60 wind 9 1440 < th dose independent rect. 20 21
153 288.86 atmosphere 1010 720 > th dose independent rect. 13 1
161 288.86 atmosphere 1010 10 > th dose independent rect. 23 1
445 288.94 atmosphere 1010 30 > th dose independent sin 13 NA
454 289.01 radiation 1 10 > th dose independent rect. 17 1
468 289.03 wind 9 1440 < th dose independent rect. 10 7
710 289.48 wind 9 1440 < th dose independent rect. 18 23
732 289.55 wind 9 1440 < th dose independent rect. 10 4
788 289.89 wind 1 90 < th dose independent rect. 14 1
794 289.92 wind 9 1440 < th dose independent rect. 7 10
809 290.08 atmosphere 1010 30 < th dose independent sin 14 NA
812 290.13 atmosphere 1010 720 < th dose independent rect. 13 8
813 290.13 wind 9 1440 < th dose independent rect. 20 18
816 290.14 atmosphere 1010 720 > th dose dependent rect. 13 1
896 290.71 atmosphere 1000 90 < th dose dependent rect. 2 20
905 290.77 atmosphere 1000 90 < th dose dependent rect. 20 20
906 290.78 wind 9 1440 < th dose independent rect. 2 15
910 290.80 wind 9 1440 < th dose independent rect. 5 12
933 290.94 wind 9 1440 < th dose independent rect. 22 19
942 291.01 wind 9 1440 < th dose independent rect. 7 7
975 291.28 atmosphere 1010 10 < th dose independent rect. 16 10