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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0108600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0485) R2 : 0.00105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0707 (0.102) R2dN8 : 0.00136 R2N8 : 0.00105
σ : 0.912
deviance : 382.16
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
362.26 0.894 3.26 -0.653 0.0557 0.257 0.787 1.42 -0.109 12.8 2.8 42 -- --
368.35 0.894 3.3 -0.668 0.0721 0.291 0.483 -- -0.141 11.8 2.4 95 -- --
364.45 0.889 3.26 -0.652 0.11 0.312 -- 1.17 -0.116 15.5 2.848 41 -- --
368.53 0.894 3.3 -0.679 0.188 0.373 -- -- -0.143 15.8 2.4 58 -- --
364.77 0.89 3.27 -0.625 -- 0.257 -- 1.14 -0.113 -- 2.88 47 -- --
372.63 0.905 3.29 -0.546 0.103 -- 0.761 -- -0.129 7.85 -- -- -- --
374.06 0.906 3.29 -0.529 0.127 -- -- -- -0.132 5.78 -- -- -- --
369.12 0.895 3.29 -0.633 -- 0.414 -- -- -0.0987 -- 1.5 94 -- --
378.76 0.906 3.28 -- 0.12 0.267 -- -- -0.0598 15.7 2.793 79 -- --
374.9 0.905 3.29 -0.525 -- -- -- -- -0.129 -- -- -- -- --
381.43 0.914 3.28 -- 0.119 -- -- -- -0.073 5.99 -- -- -- --
379.12 0.907 3.27 -- -- 0.312 -- -- -0.0351 -- 1.427 94 -- --
382.16 0.912 3.28 -- -- -- -- -- -0.0707 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 355.52 wind 1.0 270 < th dose independent rect. 10 2
2 356.13 wind 1.0 270 < th dose dependent rect. 10 2
7 358.18 wind 1.0 30 < th dose dependent rect. 10 2
9 358.81 temperature 30.0 90 < th dose independent rect. 16 11
12 358.93 wind 1.0 30 < th dose dependent rect. 8 4
13 358.95 wind 1.0 30 < th dose independent rect. 8 4
14 359.17 humidity 70.0 90 > th dose independent rect. 15 12
18 359.50 temperature 25.0 10 > th dose independent rect. 14 19
19 359.60 temperature 25.0 10 > th dose dependent rect. 14 22
20 359.75 wind 3.0 30 > th dose independent rect. 14 22
25 360.00 humidity 70.0 10 > th dose independent rect. 15 12
41 360.49 temperature 30.0 30 < th dose independent rect. 9 10
45 360.63 temperature 30.0 30 < th dose independent rect. 9 18
46 360.68 temperature 25.0 10 > th dose independent rect. 1 22
47 360.70 humidity 70.0 90 > th dose independent rect. 9 18
49 360.73 temperature 30.0 270 < th dose independent rect. 14 12
53 360.82 wind 3.0 270 < th dose dependent rect. 9 12
57 360.93 wind 3.0 10 < th dose independent rect. 19 20
60 360.95 temperature 25.0 10 > th dose dependent rect. 14 20
63 361.04 wind 3.0 90 < th dose dependent rect. 5 22
66 361.06 temperature 30.0 720 < th dose independent rect. 5 7
68 361.09 precipitation 0.1 720 > th dose independent rect. 2 1
70 361.09 precipitation 0.1 720 > th dose dependent rect. 2 1
78 361.18 temperature 30.0 720 < th dose independent rect. 15 2
99 361.43 wind 3.0 90 < th dose dependent sin 22 NA
101 361.45 humidity 50.0 90 > th dose dependent rect. 15 12
103 361.47 wind 9.0 720 < th dose dependent rect. 11 3
121 361.69 temperature 30.0 720 < th dose independent rect. 22 14
124 361.70 wind 5.0 90 > th dose dependent rect. 20 1
130 361.75 wind 1.0 30 > th dose dependent rect. 14 22
137 361.80 temperature 25.0 90 < th dose dependent rect. 15 3
139 361.82 wind 3.0 720 > th dose independent rect. 15 2
144 361.86 wind 9.0 270 < th dose dependent rect. 10 12
158 362.05 temperature 30.0 90 < th dose independent rect. 7 23
160 362.08 temperature 25.0 720 < th dose independent rect. 7 2
163 362.09 wind 3.0 30 < th dose independent rect. 5 23
175 362.14 wind 3.0 90 < th dose dependent rect. 8 19
179 362.16 humidity 60.0 30 > th dose dependent rect. 9 18
187 362.23 humidity 90.0 30 < th dose dependent rect. 14 19
194 362.29 precipitation 0.1 10 > th dose independent rect. 23 5
197 362.29 wind 3.0 270 > th dose independent rect. 22 20
198 362.29 temperature 30.0 720 < th dose independent rect. 15 20
199 362.29 precipitation 0.1 10 > th dose dependent rect. 23 5
202 362.31 temperature 30.0 90 < th dose independent rect. 15 23
209 362.34 wind 3.0 30 < th dose independent rect. 16 23
221 362.37 radiation 10.0 720 < th dose dependent rect. 2 5
222 362.39 temperature 30.0 90 > th dose independent rect. 14 22
223 362.39 wind 3.0 30 < th dose independent rect. 2 23
228 362.41 temperature 20.0 90 > th dose dependent rect. 3 17
229 362.41 wind 7.0 90 < th dose dependent rect. 19 20
232 362.43 wind 3.0 30 < th dose independent rect. 7 23
234 362.44 precipitation 0.1 10 > th dose independent rect. 1 3
241 362.44 precipitation 0.1 10 > th dose dependent rect. 1 3
248 362.46 temperature 30.0 90 < th dose independent rect. 4 23
253 362.49 temperature 30.0 90 < th dose independent rect. 20 23
254 362.50 temperature 30.0 720 < th dose independent rect. 3 10
258 362.51 wind 7.0 90 > th dose independent rect. 21 1
260 362.51 temperature 25.0 10 > th dose dependent sin 11 NA
263 362.52 radiation 40.0 720 < th dose independent rect. 15 2
271 362.54 wind 3.0 30 > th dose independent rect. 6 21
276 362.56 atmosphere 1005.0 720 > th dose independent rect. 15 1
284 362.57 wind 1.0 270 < th dose dependent rect. 8 15
288 362.59 humidity 60.0 720 > th dose independent rect. 15 2
293 362.60 temperature 30.0 270 < th dose independent rect. 10 12
312 362.63 atmosphere 995.0 720 > th dose dependent rect. 15 2
336 362.69 wind 3.0 90 < th dose independent rect. 9 18
343 362.70 wind 3.0 30 > th dose independent rect. 11 22
349 362.72 wind 3.0 30 > th dose independent rect. 22 23
352 362.72 wind 1.0 270 > th dose dependent rect. 22 20
356 362.74 wind 3.0 30 < th dose independent rect. 23 23
370 362.78 atmosphere 995.0 720 > th dose independent rect. 17 22
380 362.81 temperature 25.0 10 > th dose dependent rect. 14 16
382 362.82 wind 3.0 270 < th dose independent rect. 10 11
386 362.82 wind 9.0 720 < th dose independent rect. 17 22
390 362.83 temperature 30.0 720 < th dose independent rect. 2 12
394 362.85 wind 7.0 720 < th dose independent rect. 11 3
397 362.85 atmosphere 995.0 30 > th dose dependent rect. 16 11
410 362.90 wind 3.0 30 < th dose independent rect. 9 23
443 362.96 wind 7.0 10 > th dose independent rect. 21 8
451 362.96 wind 7.0 10 > th dose dependent rect. 21 8
465 362.98 radiation 40.0 30 > th dose dependent sin 14 NA
477 363.01 temperature 30.0 720 < th dose independent rect. 18 20
483 363.02 wind 9.0 10 > th dose independent rect. 21 14
485 363.02 wind 9.0 10 > th dose dependent rect. 21 14
497 363.04 temperature 25.0 10 > th dose dependent rect. 14 10
519 363.09 wind 1.0 720 > th dose dependent rect. 15 2
531 363.11 temperature 20.0 90 < th dose independent rect. 15 3
538 363.11 wind 9.0 90 > th dose dependent rect. 18 5
542 363.11 wind 9.0 90 > th dose dependent rect. 20 14
545 363.12 temperature 30.0 720 < th dose independent rect. 23 12
569 363.16 wind 1.0 90 > th dose independent rect. 3 13
570 363.16 temperature 20.0 90 < th dose dependent rect. 12 6
572 363.17 wind 3.0 30 < th dose independent no NA NA
578 363.17 wind 1.0 270 > th dose dependent rect. 1 16
592 363.20 wind 3.0 30 < th dose independent rect. 21 23
598 363.21 wind 9.0 90 > th dose dependent rect. 18 16
599 363.22 radiation 1.0 270 < th dose independent rect. 14 1
601 363.22 radiation 1.0 270 < th dose dependent rect. 14 1
610 363.24 wind 3.0 30 < th dose independent rect. 13 23
614 363.25 wind 9.0 90 > th dose independent rect. 20 14
620 363.27 wind 3.0 30 > th dose independent no NA NA
622 363.27 precipitation 0.1 10 > th dose independent rect. 23 19
624 363.27 wind 3.0 30 > th dose independent rect. 1 23
632 363.28 precipitation 0.1 10 > th dose dependent rect. 23 19
636 363.29 temperature 30.0 720 < th dose independent rect. 23 19
653 363.31 humidity 70.0 90 < th dose independent rect. 14 6
670 363.32 humidity 70.0 90 < th dose independent rect. 14 19
684 363.35 wind 3.0 30 < th dose independent rect. 5 20
728 363.41 humidity 50.0 720 > th dose independent rect. 5 6
729 363.41 precipitation 0.1 10 > th dose independent rect. 1 17
737 363.41 temperature 25.0 30 > th dose dependent rect. 11 23
740 363.42 precipitation 0.1 10 > th dose dependent rect. 1 17
746 363.43 radiation 10.0 720 < th dose independent rect. 2 5
750 363.43 wind 3.0 270 > th dose independent rect. 9 9
757 363.44 temperature 20.0 10 < th dose independent rect. 15 4
789 363.47 wind 3.0 90 < th dose dependent rect. 5 9
806 363.51 temperature 30.0 90 < th dose independent no NA NA
859 363.52 wind 9.0 90 > th dose independent rect. 18 5
862 363.52 radiation 40.0 90 < th dose dependent rect. 15 12
867 363.53 temperature 20.0 270 < th dose independent rect. 14 1
873 363.53 temperature 20.0 270 < th dose dependent rect. 14 1
877 363.53 wind 9.0 270 < th dose dependent rect. 16 22
879 363.54 wind 3.0 90 < th dose dependent rect. 5 18
888 363.55 wind 1.0 30 > th dose dependent rect. 22 23
892 363.56 humidity 90.0 30 < th dose dependent rect. 14 13
895 363.57 atmosphere 1005.0 30 > th dose independent rect. 9 18
900 363.57 radiation 40.0 30 > th dose dependent rect. 12 2
904 363.57 humidity 80.0 90 < th dose dependent rect. 14 6
924 363.59 temperature 25.0 720 > th dose independent rect. 3 6
927 363.59 wind 9.0 90 > th dose independent rect. 18 16
953 363.62 temperature 25.0 720 > th dose independent rect. 6 3
983 363.64 temperature 30.0 10 < th dose independent rect. 12 12
987 363.64 temperature 30.0 90 < th dose independent rect. 23 23