Os12g0108100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser Thr specific protein kinase-like protein.
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Os12g0108100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser Thr specific protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.48 | 0.729 | 10.6 | -3.88 | 0.672 | 2.34 | 0.692 | -3.35 | -0.485 | 23.8 | 27.02 | 1276 | -- | -- |
| 242.55 | 0.725 | 10.5 | -3.11 | 0.662 | 2.02 | 0.554 | -- | -0.346 | 23.7 | 26.95 | 1267 | -- | -- |
| 242.46 | 0.725 | 10.6 | -3.83 | 0.669 | 2.33 | -- | -3.01 | -0.473 | 23.7 | 27 | 1274 | -- | -- |
| 244.01 | 0.728 | 10.5 | -3.13 | 0.665 | 2.01 | -- | -- | -0.349 | 23.6 | 26.94 | 1267 | -- | -- |
| 265.37 | 0.759 | 10.6 | -3.63 | -- | 2.5 | -- | -2.13 | -0.483 | -- | 26.26 | 1181 | -- | -- |
| 411.32 | 0.951 | 10.5 | -2.47 | 0.967 | -- | 1.1 | -- | -0.335 | 0.386 | -- | -- | -- | -- |
| 416.44 | 0.956 | 10.5 | -2.51 | 0.964 | -- | -- | -- | -0.34 | 0.214 | -- | -- | -- | -- |
| 266.35 | 0.76 | 10.5 | -3.19 | -- | 2.33 | -- | -- | -0.471 | -- | 25.94 | 1164 | -- | -- |
| 480.9 | 1.02 | 10.4 | -- | 0.696 | 1.5 | -- | -- | 0.302 | 23.4 | 30.6 | 1183 | -- | -- |
| 474.92 | 1.02 | 10.5 | -2.48 | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
| 582.75 | 1.13 | 10.4 | -- | 0.93 | -- | -- | -- | -0.0598 | 0.0677 | -- | -- | -- | -- |
| 511.39 | 1.05 | 10.3 | -- | -- | 1.58 | -- | -- | 0.287 | -- | 30.4 | 1167 | -- | -- |
| 637.23 | 1.18 | 10.4 | -- | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 247.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 2 | 247.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 14 | 249.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 38 | 250.29 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 42 | 250.42 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 53 | 250.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 184 | 252.71 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 187 | 252.73 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 217 | 252.96 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 220 | 252.97 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 221 | 252.97 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 224 | 253.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 231 | 253.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 248 | 253.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 323 | 254.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 326 | 254.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 432 | 255.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 455 | 255.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 574 | 255.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 577 | 255.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 587 | 255.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 659 | 256.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 691 | 256.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 697 | 256.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 714 | 256.74 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 723 | 256.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 725 | 256.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 818 | 257.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 949 | 258.11 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 961 | 258.34 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 981 | 258.44 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |