Os12g0107300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0107300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.55 | 0.314 | 10.2 | -0.0728 | 0.383 | -0.808 | 0.278 | 1.2 | 0.0591 | 22.1 | 28 | 106 | -- | -- |
| 46.12 | 0.316 | 10.1 | 0.138 | 0.374 | -0.864 | 0.5 | -- | 0.117 | 22.3 | 26.6 | 124 | -- | -- |
| 44.82 | 0.312 | 10.2 | -0.109 | 0.372 | -0.798 | -- | 1.36 | 0.054 | 22 | 28.01 | 120 | -- | -- |
| 46.99 | 0.319 | 10.1 | 0.12 | 0.375 | -0.853 | -- | -- | 0.108 | 21.6 | 25.96 | 124 | -- | -- |
| 48.55 | 0.325 | 10.2 | -0.191 | -- | -0.907 | -- | 1.5 | 0.0262 | -- | 29.66 | 535 | -- | -- |
| 57.05 | 0.354 | 10.1 | 0.339 | 0.384 | -- | 0.321 | -- | 0.288 | 19.9 | -- | -- | -- | -- |
| 57.31 | 0.355 | 10.1 | 0.332 | 0.387 | -- | -- | -- | 0.289 | 19.7 | -- | -- | -- | -- |
| 50.79 | 0.332 | 10.1 | 0.0871 | -- | -0.928 | -- | -- | 0.0948 | -- | 29.3 | 577 | -- | -- |
| 47.33 | 0.32 | 10.1 | -- | 0.373 | -0.898 | -- | -- | 0.0835 | 21.8 | 26.17 | 134 | -- | -- |
| 65.37 | 0.378 | 10.1 | 0.327 | -- | -- | -- | -- | 0.283 | -- | -- | -- | -- | -- |
| 60.22 | 0.363 | 10.1 | -- | 0.384 | -- | -- | -- | 0.252 | 19.7 | -- | -- | -- | -- |
| 50.95 | 0.332 | 10.1 | -- | -- | -0.956 | -- | -- | 0.082 | -- | 29.31 | 601 | -- | -- |
| 68.18 | 0.385 | 10.1 | -- | -- | -- | -- | -- | 0.247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 6 | 42.93 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 7 | 42.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 27 | 43.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 80 | 43.78 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 103 | 43.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 104 | 43.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 159 | 44.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 171 | 44.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 211 | 44.45 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 12 |
| 219 | 44.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 9 |
| 238 | 44.57 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 268 | 44.68 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 376 | 44.93 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 402 | 45.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 420 | 45.05 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 10 |
| 434 | 45.07 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 455 | 45.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 462 | 45.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 484 | 45.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 488 | 45.17 | humidity | 70 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 503 | 45.19 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 12 |
| 512 | 45.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 513 | 45.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 613 | 45.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 629 | 45.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 648 | 45.36 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 836 | 45.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 859 | 45.48 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 878 | 45.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 881 | 45.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 897 | 45.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 902 | 45.50 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 917 | 45.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 945 | 45.52 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 947 | 45.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 989 | 45.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |