Os12g0106500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nodulin-like domain containing protein.
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Os12g0106500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nodulin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.43 | 0.482 | 10.4 | -0.325 | 3.38 | -2.59 | 0.787 | 1.03 | -0.337 | 5.03 | 8.901 | 291 | 11.9 | 20.9 |
| 105.81 | 0.479 | 10.4 | -0.457 | 3.48 | -2.53 | 0.898 | -- | -0.375 | 4.91 | 6.537 | 301 | 11.9 | 20.7 |
| 105.81 | 0.479 | 10.4 | -0.37 | 3.49 | -2.65 | -- | 0.881 | -0.344 | 4.79 | 4.392 | 324 | 11.5 | 20.8 |
| 106.5 | 0.481 | 10.4 | -0.422 | 3.49 | -2.67 | -- | -- | -0.347 | 4.82 | 3.979 | 320 | 11.5 | 20.9 |
| 410.06 | 0.943 | 10.4 | -0.13 | -- | -4.2 | -- | 1.62 | -0.276 | -- | 24.22 | 372 | 10 | 22.9 |
| 196.94 | 0.658 | 10.4 | -0.869 | 3.68 | -- | 1.34 | -- | -0.734 | 6 | -- | -- | -- | -- |
| 201.35 | 0.664 | 10.4 | -0.858 | 3.68 | -- | -- | -- | -0.739 | 5.99 | -- | -- | -- | -- |
| 187.8 | 0.638 | 10.3 | 0.208 | -- | -4.6 | -- | -- | -0.0534 | -- | 17.34 | 552 | 8.08 | 9.87 |
| 111.48 | 0.492 | 10.4 | -- | 3.38 | -2.84 | -- | -- | -0.331 | 4.85 | 4.644 | 324 | 11.3 | 21.2 |
| 904.85 | 1.41 | 10.5 | -0.75 | -- | -- | -- | -- | -0.655 | -- | -- | -- | -- | -- |
| 220.75 | 0.695 | 10.4 | -- | 3.67 | -- | -- | -- | -0.643 | 6 | -- | -- | -- | -- |
| 128.87 | 0.529 | 10.5 | -- | -- | -4.5 | -- | -- | -0.489 | -- | 6.055 | 469 | 9.19 | 9.6 |
| 919.69 | 1.42 | 10.5 | -- | -- | -- | -- | -- | -0.572 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 6 | 110.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 33 | 117.95 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 67 | 122.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 72 | 122.73 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 73 | 122.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 96 | 124.20 | temperature | 30.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 103 | 124.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 115 | 125.22 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 137 | 126.37 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 20 |
| 143 | 126.50 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 3 |
| 154 | 127.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 20 |
| 158 | 127.14 | temperature | 20.0 | 90 | > th | dose independent | rect. | 14 | 19 |
| 166 | 127.55 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 198 | 128.71 | temperature | 15.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 225 | 129.53 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 276 | 130.92 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 283 | 131.28 | radiation | 1.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 289 | 131.52 | radiation | 1.0 | 270 | > th | dose independent | sin | 15 | NA |
| 307 | 131.86 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 337 | 132.23 | radiation | 1.0 | 270 | < th | dose independent | sin | 15 | NA |
| 341 | 132.32 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 20 |
| 346 | 132.50 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 15 |
| 365 | 132.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 19 |
| 366 | 132.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 368 | 132.85 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 378 | 133.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 401 | 133.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 406 | 133.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 407 | 133.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 408 | 133.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 409 | 133.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 410 | 133.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 414 | 133.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 416 | 133.70 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 418 | 133.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 419 | 133.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 424 | 133.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 425 | 133.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 431 | 133.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 432 | 133.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 433 | 133.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 434 | 133.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 437 | 133.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 438 | 133.96 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 444 | 134.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 446 | 134.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 449 | 134.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 450 | 134.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 455 | 134.09 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 462 | 134.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 465 | 134.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 473 | 134.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 8 |
| 488 | 134.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 497 | 134.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 5 |
| 498 | 134.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 500 | 134.56 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 503 | 134.61 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 517 | 134.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 568 | 135.15 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 7 |
| 572 | 135.16 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 584 | 135.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 613 | 135.36 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 625 | 135.40 | humidity | 70.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 629 | 135.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 630 | 135.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 639 | 135.46 | radiation | 30.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 659 | 135.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 673 | 135.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 693 | 135.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 763 | 135.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 764 | 135.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 766 | 135.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 767 | 135.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 15 |
| 779 | 135.97 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 784 | 136.00 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 786 | 136.00 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 904 | 136.38 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 914 | 136.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 979 | 136.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 15 |
| 981 | 136.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 15 |