Os12g0105800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0105800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.98 | 0.467 | 7.69 | -0.423 | 3.02 | 0.773 | -0.272 | -1.85 | -0.0906 | 5.6 | 86.23 | 1340 | -- | -- |
| 103.63 | 0.474 | 7.67 | -0.208 | 3.02 | 0.643 | -0.36 | -- | -0.0879 | 5.62 | 104.2 | 1324 | -- | -- |
| 99.15 | 0.464 | 7.69 | -0.423 | 3.01 | 0.776 | -- | -1.87 | -0.091 | 5.62 | 86.21 | 1325 | -- | -- |
| 103.83 | 0.475 | 7.67 | -0.218 | 3.02 | 0.696 | -- | -- | -0.087 | 5.7 | 94.75 | 1215 | -- | -- |
| 510.66 | 1.06 | 7.71 | -0.0702 | -- | -1.8 | -- | -0.0313 | -0.00554 | -- | 91 | 1277 | -- | -- |
| 112.7 | 0.498 | 7.67 | -0.169 | 3.07 | -- | -0.318 | -- | -0.065 | 5.54 | -- | -- | -- | -- |
| 112.95 | 0.498 | 7.67 | -0.17 | 3.07 | -- | -- | -- | -0.0636 | 5.54 | -- | -- | -- | -- |
| 501.76 | 1.05 | 7.71 | -0.0944 | -- | -1.92 | -- | -- | 0.0224 | -- | 95.11 | 1976 | -- | -- |
| 105 | 0.477 | 7.67 | -- | 3.02 | 0.691 | -- | -- | -0.0663 | 5.7 | 94.96 | 1222 | -- | -- |
| 602.56 | 1.15 | 7.71 | -0.0691 | -- | -- | -- | -- | 0.0109 | -- | -- | -- | -- | -- |
| 113.71 | 0.499 | 7.66 | -- | 3.07 | -- | -- | -- | -0.0447 | 5.54 | -- | -- | -- | -- |
| 346.36 | 0.867 | 7.72 | -- | -- | -3.07 | -- | -- | 0.0329 | -- | 95 | 369 | -- | -- |
| 602.69 | 1.15 | 7.71 | -- | -- | -- | -- | -- | 0.0186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.48 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 2 | 96.02 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 4 | 96.02 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 6 | 96.02 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 33 | 96.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 58 | 96.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 60 | 96.02 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 62 | 96.02 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 113 | 96.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 115 | 96.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 119 | 96.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 121 | 96.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 123 | 96.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 125 | 96.50 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 126 | 96.60 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 139 | 96.83 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 12 |
| 144 | 96.89 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 153 | 96.98 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 157 | 97.07 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 173 | 97.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 185 | 97.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 204 | 97.58 | humidity | 80 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 214 | 97.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 215 | 97.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 221 | 97.79 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 241 | 98.01 | humidity | 80 | 1440 | < th | dose dependent | sin | 6 | NA |
| 271 | 98.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 297 | 98.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 322 | 98.50 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 327 | 98.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 339 | 98.68 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 341 | 98.69 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 348 | 98.78 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 351 | 98.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 355 | 98.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 372 | 98.95 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 10 | 20 |
| 394 | 99.07 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 407 | 99.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 422 | 99.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 442 | 99.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 495 | 99.32 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 17 | 19 |
| 522 | 99.39 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 542 | 99.44 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 558 | 99.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 559 | 99.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 569 | 99.47 | humidity | 90 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 623 | 99.54 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 17 |
| 639 | 99.56 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 763 | 99.66 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 800 | 99.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 804 | 99.71 | humidity | 50 | 1440 | > th | dose dependent | rect. | 19 | 20 |
| 820 | 99.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 857 | 99.77 | humidity | 50 | 1440 | > th | dose dependent | rect. | 8 | 22 |
| 866 | 99.78 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 879 | 99.79 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 896 | 99.81 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 17 | 11 |
| 951 | 99.87 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 976 | 99.91 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 988 | 99.93 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 16 | 13 |