Os12g0103500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0103500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 375.98 | 0.911 | 3.58 | -0.0793 | 0.823 | 0.562 | 0.24 | 2.37 | -0.205 | 13.3 | 0.09222 | 4443 | -- | -- |
| 379.19 | 0.907 | 3.63 | -0.102 | 0.816 | 0.994 | 0.232 | -- | -0.186 | 13.2 | 0.4021 | 4438 | -- | -- |
| 376.22 | 0.903 | 3.58 | -0.0731 | 0.823 | 0.56 | -- | 2.35 | -0.202 | 13.2 | 0.09387 | 4442 | -- | -- |
| 379.39 | 0.907 | 3.63 | -0.0935 | 0.814 | 0.979 | -- | -- | -0.196 | 13.2 | 0.4099 | 4438 | -- | -- |
| 417.92 | 0.952 | 3.59 | -0.0929 | -- | 0.638 | -- | 2.17 | -0.22 | -- | -0.0008012 | 4359 | -- | -- |
| 398.89 | 0.936 | 3.65 | 0.214 | 0.809 | -- | 0.102 | -- | -0.281 | 13.2 | -- | -- | -- | -- |
| 398.93 | 0.935 | 3.65 | 0.218 | 0.809 | -- | -- | -- | -0.28 | 13.2 | -- | -- | -- | -- |
| 420.88 | 0.955 | 3.63 | -0.108 | -- | 0.961 | -- | -- | -0.206 | -- | 0.3743 | 4441 | -- | -- |
| 379.6 | 0.907 | 3.63 | -- | 0.818 | 0.939 | -- | -- | -0.197 | 13.2 | 0.4089 | 4438 | -- | -- |
| 439.41 | 0.979 | 3.66 | 0.187 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 400.18 | 0.936 | 3.65 | -- | 0.805 | -- | -- | -- | -0.304 | 13.2 | -- | -- | -- | -- |
| 421.17 | 0.956 | 3.64 | -- | -- | 0.925 | -- | -- | -0.2 | -- | 0.3691 | 4438 | -- | -- |
| 440.33 | 0.979 | 3.66 | -- | -- | -- | -- | -- | -0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 370.39 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 2 | 370.39 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 7 | 372.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 10 | 373.58 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 373.61 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 12 | 373.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 13 | 373.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 14 | 373.67 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 16 | 373.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 25 | 374.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 29 | 374.18 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 31 | 374.22 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 32 | 374.22 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 9 |
| 33 | 374.30 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 34 | 374.30 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 36 | 374.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 9 |
| 44 | 374.44 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 50 | 374.65 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 22 | NA |
| 51 | 374.66 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 22 | NA |
| 52 | 374.66 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 22 | NA |
| 62 | 374.75 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 63 | 374.75 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 74 | 374.81 | wind | 1.0 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 161 | 375.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 17 |
| 162 | 375.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 17 |
| 163 | 375.29 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 17 |
| 182 | 375.42 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 185 | 375.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 192 | 375.48 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 17 |
| 204 | 375.54 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 22 |
| 214 | 375.59 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 256 | 375.70 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 15 |
| 260 | 375.71 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 277 | 375.75 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 282 | 375.75 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 20 |
| 328 | 375.95 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 342 | 376.04 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 345 | 376.04 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 17 | NA |
| 373 | 376.15 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 374 | 376.16 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 383 | 376.19 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 466 | 376.36 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 542 | 376.51 | precipitation | 0.1 | 4320 | > th | dose dependent | no | NA | NA |
| 568 | 376.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 637 | 376.74 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 686 | 376.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 6 |
| 706 | 376.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 726 | 376.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 803 | 377.15 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 905 | 377.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 953 | 377.39 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 13 |
| 994 | 377.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |