Os12g0102600 - FiT-DB

Os12g0102600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	13.7	(0.0264)	R²	:	0.439
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-0.991	(0.0591)	R²_dE	:	0.346	R²_E	:	0.295
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.531	(0.0557)	R²_dN8	:	0.145	R²_N8	:	0.0928
σ	:	0.497
deviance	:	113.82
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	25.37
memory length	:	47
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
107.89	0.488	13.7	0.0356	0.0742	-0.973	-1.63	0.403	-0.479	21.1	21.76	10	--	--
108.06	0.484	13.7	0.0378	0.0365	-0.946	-1.37	--	-0.479	20.3	21.94	10	--	--
110.88	0.49	13.7	0.0767	0.22	-1.11	--	-0.771	-0.535	1.41	22.06	39	--	--
111.46	0.492	13.7	0.0633	0.326	-1.17	--	--	-0.539	1.58	22.09	49	--	--
112.2	0.496	13.7	0.049	--	-0.922	--	-0.609	-0.47	--	22.06	39	--	--
134.07	0.543	13.7	0.0682	0.857	--	0.965	--	-0.471	11.6	--	--	--	--
137.94	0.55	13.7	0.109	0.853	--	--	--	-0.465	11.9	--	--	--	--
113.7	0.497	13.7	0.0795	--	-0.976	--	--	-0.51	--	24.76	47	--	--
111.43	0.492	13.7	--	0.373	-1.22	--	--	-0.556	1.59	22.45	53	--	--
183.76	0.633	13.7	0.0834	--	--	--	--	-0.477	--	--	--	--	--
138.25	0.55	13.7	--	0.852	--	--	--	-0.477	11.9	--	--	--	--
113.82	0.497	13.7	--	--	-0.991	--	--	-0.531	--	25.37	47	--	--
183.95	0.633	13.7	--	--	--	--	--	-0.486	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	106.52	radiation	20	90	< th	dose dependent	rect.	23	23
3	107.70	radiation	20	1440	< th	dose dependent	rect.	11	1
4	107.82	radiation	30	30	< th	dose dependent	rect.	11	23
5	107.93	radiation	20	10	< th	dose dependent	rect.	13	23
6	107.96	radiation	20	10	< th	dose dependent	no	NA	NA
10	108.22	radiation	20	90	< th	dose dependent	sin	2	NA
11	108.22	radiation	30	30	< th	dose dependent	rect.	15	23
18	108.49	radiation	20	90	< th	dose dependent	rect.	6	23
23	108.65	radiation	20	30	< th	dose dependent	rect.	9	23
25	108.77	radiation	20	90	< th	dose dependent	rect.	19	23
26	108.86	radiation	1	1440	> th	dose independent	rect.	11	1
29	109.15	radiation	20	10	< th	dose dependent	rect.	1	23
46	109.66	radiation	10	720	< th	dose dependent	rect.	8	12
49	109.69	radiation	20	10	< th	dose dependent	rect.	7	23
51	109.78	radiation	1	1440	> th	dose independent	rect.	10	4
53	109.79	radiation	10	720	< th	dose independent	rect.	14	5
56	109.83	radiation	1	1440	< th	dose independent	rect.	11	1
57	109.83	radiation	1	1440	< th	dose dependent	rect.	11	1
63	109.87	radiation	20	1440	< th	dose independent	rect.	11	1
69	109.97	radiation	10	720	< th	dose dependent	sin	22	NA
75	110.04	radiation	1	1440	> th	dose independent	rect.	13	1
85	110.20	radiation	1	1440	< th	dose independent	rect.	9	3
86	110.20	radiation	1	1440	< th	dose dependent	rect.	9	3
88	110.23	radiation	20	90	< th	dose dependent	rect.	1	16
109	110.51	radiation	10	90	> th	dose independent	sin	0	NA
112	110.60	humidity	70	10	> th	dose dependent	rect.	1	21
113	110.61	radiation	10	10	< th	dose dependent	sin	1	NA
117	110.64	radiation	10	90	> th	dose independent	rect.	17	23
120	110.65	radiation	10	270	< th	dose independent	rect.	22	22
124	110.71	radiation	20	30	< th	dose dependent	rect.	17	23
130	110.77	radiation	30	90	< th	dose dependent	rect.	1	14
172	111.06	radiation	1	1440	< th	dose independent	rect.	13	1
174	111.06	radiation	1	1440	< th	dose dependent	rect.	13	1
189	111.25	radiation	10	720	< th	dose dependent	rect.	13	6
207	111.37	radiation	10	90	> th	dose independent	no	NA	NA
208	111.37	radiation	10	90	> th	dose independent	rect.	6	12
292	111.43	humidity	50	10	> th	dose dependent	rect.	13	23
316	111.57	radiation	10	90	> th	dose independent	rect.	9	23
330	111.62	radiation	10	1440	< th	dose dependent	rect.	8	20
362	111.73	humidity	60	90	> th	dose dependent	rect.	24	23
367	111.76	radiation	10	720	> th	dose independent	rect.	11	22
384	111.78	radiation	20	90	< th	dose independent	rect.	1	14
389	111.81	radiation	10	720	< th	dose independent	rect.	11	9
406	111.89	radiation	1	90	> th	dose dependent	no	NA	NA
407	111.89	radiation	1	90	> th	dose dependent	rect.	4	15
483	111.94	humidity	80	10	> th	dose independent	rect.	1	21
488	111.95	radiation	1	720	> th	dose dependent	rect.	12	21
540	112.16	humidity	80	1440	< th	dose independent	rect.	8	6
602	112.36	radiation	10	720	< th	dose independent	rect.	9	12
614	112.39	radiation	10	720	< th	dose independent	sin	21	NA
679	112.66	radiation	1	90	> th	dose dependent	rect.	17	23
688	112.69	radiation	30	4320	< th	dose independent	rect.	7	1
698	112.70	radiation	30	720	< th	dose dependent	rect.	6	23
734	112.77	radiation	1	720	> th	dose dependent	sin	19	NA
756	112.83	radiation	10	720	> th	dose independent	sin	22	NA
771	112.86	radiation	30	4320	< th	dose independent	rect.	2	6
776	112.87	humidity	90	720	< th	dose dependent	rect.	9	7
788	112.91	radiation	10	90	< th	dose independent	rect.	6	23
827	113.00	radiation	10	4320	< th	dose dependent	rect.	23	6
839	113.04	radiation	30	4320	< th	dose independent	rect.	17	15
882	113.15	radiation	20	720	< th	dose independent	rect.	6	23
899	113.19	radiation	1	90	> th	dose dependent	rect.	15	23
912	113.23	radiation	30	4320	< th	dose independent	rect.	20	12
956	113.33	radiation	10	720	> th	dose independent	rect.	7	10
988	113.38	radiation	1	1440	> th	dose dependent	rect.	11	2
991	113.38	radiation	1	90	> th	dose dependent	rect.	9	23