Os12g0102500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0102500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.38 | 0.263 | 11.5 | 0.0498 | 0.782 | -0.489 | 0.11 | -0.0534 | -0.218 | 2.45 | 20.2 | 701 | -- | -- |
| 31.39 | 0.261 | 11.5 | 0.0579 | 0.782 | -0.483 | 0.107 | -- | -0.216 | 2.45 | 20.25 | 700 | -- | -- |
| 31.42 | 0.261 | 11.5 | 0.052 | 0.783 | -0.49 | -- | -0.0392 | -0.218 | 2.45 | 20.2 | 700 | -- | -- |
| 31.43 | 0.261 | 11.5 | 0.0571 | 0.782 | -0.485 | -- | -- | -0.216 | 2.44 | 20.24 | 700 | -- | -- |
| 59.66 | 0.36 | 11.5 | 0.0653 | -- | -0.557 | -- | -0.0985 | -0.205 | -- | 20.39 | 198 | -- | -- |
| 37.67 | 0.288 | 11.5 | -0.113 | 0.763 | -- | 0.195 | -- | -0.316 | 2.8 | -- | -- | -- | -- |
| 37.8 | 0.288 | 11.5 | -0.117 | 0.763 | -- | -- | -- | -0.317 | 2.77 | -- | -- | -- | -- |
| 53.29 | 0.34 | 11.5 | 0.0318 | -- | -0.468 | -- | -- | -0.135 | -- | 25.8 | 133 | -- | -- |
| 31.38 | 0.261 | 11.5 | -- | 0.758 | -0.438 | -- | -- | -0.216 | 2.44 | 20.71 | 528 | -- | -- |
| 71.57 | 0.395 | 11.5 | -0.0846 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 38.16 | 0.289 | 11.5 | -- | 0.76 | -- | -- | -- | -0.304 | 2.77 | -- | -- | -- | -- |
| 53.29 | 0.34 | 11.5 | -- | -- | -0.459 | -- | -- | -0.157 | -- | 25.84 | 133 | -- | -- |
| 71.75 | 0.395 | 11.5 | -- | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 16 |
| 3 | 30.63 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 7 | 30.69 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 11 | 30.76 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 16 |
| 17 | 30.80 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 21 | 30.84 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 24 | 30.86 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 44 | 31.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 71 | 31.14 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 112 | 31.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 122 | 31.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 131 | 31.35 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 141 | 31.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 159 | 31.43 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 184 | 31.49 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 185 | 31.49 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 187 | 31.50 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 190 | 31.50 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 20 |
| 205 | 31.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 213 | 31.53 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 233 | 31.56 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 246 | 31.57 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 255 | 31.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 256 | 31.58 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 23 |
| 269 | 31.59 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 272 | 31.60 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 301 | 31.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 9 |
| 358 | 31.70 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 359 | 31.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 424 | 31.81 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 457 | 31.86 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 535 | 31.95 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 664 | 32.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 708 | 32.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 772 | 32.19 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 773 | 32.19 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 812 | 32.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 825 | 32.23 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 849 | 32.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 851 | 32.25 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 916 | 32.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 955 | 32.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 971 | 32.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 21 |