Os12g0101800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NPH1-1.
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Os12g0101800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NPH1-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.5 | 0.593 | 12.3 | 0.11 | 1.13 | -2.06 | -0.646 | 0.741 | 0.465 | 24 | 91.16 | 34 | -- | -- |
| 160.05 | 0.589 | 12.3 | 0.121 | 1.14 | -2.04 | -0.884 | -- | 0.476 | 0.0205 | 91.12 | 39 | -- | -- |
| 160.23 | 0.59 | 12.3 | 0.122 | 1.13 | -2.08 | -- | 1.3 | 0.457 | 23.9 | 91.18 | 39 | -- | -- |
| 163.23 | 0.595 | 12.3 | 0.083 | 1.17 | -1.99 | -- | -- | 0.447 | 23.9 | 91 | 52 | -- | -- |
| 204.71 | 0.67 | 12.3 | 0.167 | -- | -3.29 | -- | 1.65 | 0.483 | -- | 91.18 | 39 | -- | -- |
| 220.95 | 0.697 | 12.3 | 0.0464 | 2.11 | -- | -0.688 | -- | 0.458 | 1.24 | -- | -- | -- | -- |
| 222.9 | 0.699 | 12.3 | 0.0704 | 2.11 | -- | -- | -- | 0.462 | 1.24 | -- | -- | -- | -- |
| 209.79 | 0.678 | 12.3 | 0.15 | -- | -3.23 | -- | -- | 0.479 | -- | 91 | 52 | -- | -- |
| 163.59 | 0.596 | 12.3 | -- | 1.17 | -1.99 | -- | -- | 0.441 | 23.9 | 91 | 52 | -- | -- |
| 497.73 | 1.04 | 12.3 | 0.152 | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
| 223.03 | 0.699 | 12.3 | -- | 2.11 | -- | -- | -- | 0.454 | 1.24 | -- | -- | -- | -- |
| 210.38 | 0.678 | 12.3 | -- | -- | -3.23 | -- | -- | 0.462 | -- | 91 | 52 | -- | -- |
| 498.34 | 1.04 | 12.3 | -- | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.73 | humidity | 90 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 153.90 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 4 | 155.35 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 5 |
| 6 | 155.44 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 5 |
| 8 | 155.62 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 15 |
| 22 | 156.47 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 21 |
| 36 | 156.81 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 38 | 156.89 | humidity | 90 | 30 | < th | dose dependent | rect. | 22 | 23 |
| 51 | 157.37 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 59 | 157.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 61 | 157.54 | humidity | 50 | 90 | > th | dose dependent | sin | 23 | NA |
| 76 | 157.94 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 23 |
| 89 | 158.21 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 193 | 159.48 | humidity | 90 | 90 | < th | dose dependent | sin | 23 | NA |
| 196 | 159.48 | humidity | 90 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 270 | 160.04 | humidity | 90 | 30 | < th | dose dependent | no | NA | NA |
| 307 | 160.39 | humidity | 90 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 324 | 160.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 332 | 160.73 | humidity | 50 | 90 | > th | dose dependent | no | NA | NA |
| 382 | 161.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 442 | 161.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 474 | 162.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 12 |
| 475 | 162.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 14 |
| 508 | 162.73 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 549 | 163.14 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 550 | 163.14 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 563 | 163.26 | humidity | 80 | 1440 | < th | dose dependent | sin | 6 | NA |
| 570 | 163.34 | humidity | 50 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 571 | 163.34 | humidity | 50 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 615 | 163.76 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 656 | 164.31 | humidity | 90 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 664 | 164.40 | humidity | 50 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 706 | 165.01 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 763 | 165.34 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 771 | 165.36 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 814 | 165.53 | humidity | 60 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 822 | 165.61 | humidity | 50 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 976 | 166.11 | humidity | 60 | 30 | > th | dose dependent | rect. | 3 | 23 |