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Os11g0708600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RECQL1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0189) R2 : 0.601
β1 : -1.8 (0.0691) R2dD : 0.619 R2D : 0.593
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.109 (0.0403) R2dN8 : 0.00852 R2N8 : -0.0177
σ : 0.354
deviance : 57.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.09 0.305 10.3 -1.98 0.45 -0.56 0.316 0.184 -0.221 6.39 24.4 40 -- --
42.15 0.302 10.3 -1.95 0.452 -0.581 0.33 -- -0.218 6.34 24.33 40 -- --
42.22 0.303 10.3 -1.95 0.448 -0.64 -- 0.0886 -0.193 6.59 22.52 59 -- --
42.22 0.303 10.3 -1.95 0.448 -0.689 -- -- -0.19 6.61 22.1 59 -- --
52.42 0.339 10.3 -1.94 -- -0.584 -- 0.146 -0.187 -- 22.92 36 -- --
46.94 0.321 10.2 -1.82 0.442 -- 0.191 -- -0.116 7.21 -- -- -- --
47.03 0.321 10.2 -1.81 0.441 -- -- -- -0.116 7.3 -- -- -- --
52.42 0.339 10.3 -1.92 -- -0.595 -- -- -0.187 -- 23.15 10 -- --
129.68 0.53 10.2 -- 0.273 0.555 -- -- 0.15 8.32 34.94 563 -- --
57.37 0.354 10.3 -1.8 -- -- -- -- -0.109 -- -- -- -- --
133.57 0.541 10.2 -- 0.425 -- -- -- 0.0858 7.58 -- -- -- --
81.96 0.422 10.2 -- -- 1.27 -- -- 0.403 -- 23.2 47520 -- --
143.26 0.559 10.2 -- -- -- -- -- 0.0916 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.99 radiation 20 4320 < th dose independent rect. 20 10
2 41.37 temperature 10 90 > th dose dependent rect. 7 22
3 41.38 temperature 10 10 > th dose dependent rect. 7 23
4 41.40 humidity 70 90 > th dose dependent rect. 5 22
5 41.46 temperature 20 90 > th dose independent rect. 7 22
10 41.62 temperature 15 1440 > th dose independent rect. 6 14
24 41.95 humidity 80 1440 > th dose independent rect. 9 4
27 41.98 humidity 80 1440 < th dose independent rect. 9 4
28 41.98 humidity 70 90 > th dose dependent rect. 5 7
29 42.00 temperature 25 90 < th dose dependent rect. 23 22
30 42.00 humidity 80 270 > th dose dependent rect. 2 22
37 42.04 temperature 25 10 < th dose dependent rect. 15 22
44 42.07 temperature 25 10 < th dose dependent rect. 1 23
45 42.08 humidity 80 1440 < th dose independent rect. 10 2
50 42.09 humidity 70 1440 > th dose dependent rect. 9 4
51 42.09 temperature 25 10 < th dose dependent rect. 23 23
58 42.12 temperature 25 90 < th dose dependent rect. 21 23
59 42.13 humidity 70 1440 > th dose dependent rect. 10 2
70 42.14 atmosphere 995 14400 > th dose independent rect. 17 3
72 42.14 temperature 25 10 < th dose dependent no NA NA
74 42.14 temperature 25 10 < th dose dependent rect. 9 23
75 42.14 temperature 25 10 < th dose dependent rect. 11 23
83 42.15 temperature 25 10 < th dose dependent rect. 17 23
86 42.16 temperature 25 10 < th dose dependent rect. 5 23
89 42.16 temperature 25 30 < th dose dependent rect. 19 23
93 42.17 temperature 25 90 < th dose dependent rect. 3 23
95 42.18 temperature 25 30 < th dose dependent rect. 7 23
103 42.19 temperature 25 10 < th dose dependent rect. 3 23
107 42.20 atmosphere 995 1440 > th dose independent rect. 17 11
117 42.22 humidity 80 90 > th dose dependent rect. 5 12
121 42.23 atmosphere 995 1440 > th dose independent rect. 17 9
127 42.24 atmosphere 995 720 > th dose independent rect. 15 16
128 42.24 atmosphere 995 720 > th dose independent rect. 13 18
144 42.30 atmosphere 995 1440 > th dose independent rect. 17 15
152 42.32 radiation 20 4320 < th dose independent rect. 22 8
168 42.35 atmosphere 995 1440 > th dose independent rect. 17 18
176 42.36 humidity 90 270 < th dose independent rect. 24 22
202 42.41 atmosphere 995 1440 > th dose independent rect. 17 20
241 42.47 atmosphere 995 720 > th dose independent rect. 19 22
247 42.48 radiation 1 1440 < th dose independent rect. 10 1
250 42.48 temperature 15 90 > th dose dependent sin 7 NA
251 42.48 radiation 1 1440 < th dose dependent rect. 10 1
273 42.50 temperature 15 4320 > th dose independent rect. 7 1
274 42.50 temperature 20 270 > th dose independent rect. 7 14
293 42.52 temperature 15 720 > th dose independent rect. 7 7
309 42.53 humidity 80 270 > th dose dependent rect. 20 22
322 42.55 humidity 90 270 < th dose independent rect. 7 15
323 42.55 humidity 90 720 > th dose dependent rect. 7 16
346 42.57 temperature 25 30 > th dose dependent rect. 21 10
353 42.58 atmosphere 995 720 > th dose independent rect. 5 16
372 42.60 atmosphere 995 14400 < th dose independent rect. 16 1
374 42.60 humidity 90 270 > th dose independent rect. 2 22
375 42.60 radiation 1 1440 < th dose dependent rect. 7 9
381 42.60 humidity 70 270 > th dose dependent rect. 14 23
388 42.61 atmosphere 995 14400 < th dose dependent rect. 16 1
405 42.61 humidity 70 270 > th dose dependent rect. 17 23
406 42.62 wind 7 1440 < th dose independent rect. 7 1
428 42.62 humidity 80 270 > th dose dependent rect. 22 23
429 42.63 radiation 1 1440 > th dose independent rect. 10 2
431 42.63 humidity 70 270 > th dose dependent rect. 20 16
466 42.65 atmosphere 995 720 > th dose independent rect. 5 18
469 42.65 temperature 15 720 > th dose independent rect. 7 22
471 42.65 humidity 80 270 > th dose dependent no NA NA
485 42.66 temperature 20 90 < th dose dependent rect. 3 20
537 42.69 humidity 80 90 > th dose independent rect. 5 7
539 42.69 humidity 80 90 < th dose independent rect. 20 20
555 42.70 humidity 80 90 > th dose independent rect. 5 22
572 42.71 atmosphere 995 720 > th dose independent rect. 13 10
593 42.73 atmosphere 995 720 > th dose independent rect. 11 14
595 42.73 temperature 15 720 > th dose independent rect. 19 22
596 42.73 humidity 90 270 < th dose independent rect. 7 22
598 42.73 temperature 30 90 < th dose dependent sin 7 NA
637 42.75 atmosphere 995 14400 > th dose independent rect. 7 13
639 42.75 temperature 15 720 > th dose independent rect. 1 18
668 42.76 humidity 50 14400 > th dose independent rect. 19 11
687 42.76 temperature 15 10 > th dose dependent rect. 18 23
723 42.79 temperature 20 30 < th dose dependent sin 5 NA
746 42.80 atmosphere 1015 720 < th dose independent rect. 1 18
785 42.82 temperature 20 90 > th dose independent sin 0 NA
808 42.83 humidity 90 720 < th dose independent rect. 7 7
812 42.83 humidity 80 90 > th dose dependent rect. 5 16
830 42.84 temperature 10 43200 > th dose independent rect. 14 6
868 42.86 temperature 30 270 < th dose dependent rect. 21 10
880 42.87 atmosphere 995 90 > th dose dependent rect. 15 16
914 42.88 temperature 15 90 > th dose dependent rect. 18 22
947 42.89 temperature 20 90 > th dose independent rect. 9 14
954 42.89 temperature 20 90 < th dose dependent rect. 23 13
979 42.90 humidity 80 1440 < th dose independent rect. 22 15
1000 42.91 humidity 90 270 > th dose independent rect. 21 23